Wikidata

Wikidata:Property proposal/LiverTox Likelihood Score

< Wikidata:Property proposal

LiverTox likelihood score edit

Originally proposed at Wikidata:Property proposal/Natural science

DescriptionA categorization of the likelihood that a medication is associated with drug induced liver injury that was developed by the Drug-Induced Liver Injury Network (DILIN) Network and published in NCBI's LiverTox
Data typeItem
DomainQ11173, Q28885102, Q12140, Q11344, Q8386, Q79529, Q181394
Allowed valuesQ83283320, Q83284157, Q83284310, Q83284515, Q83284667, Q83284878, Q83285233
Example 1iron (Q677) → LiverTox toxicity likelihood category A (Q83283320), qualifier has characteristic (P1552) → LiverTox toxicity likelihood high dose (HD) qualifier (Q83285233)
Example 2talazoparib (Q25100990) → LiverTox toxicity likelihood category E* (Q83284878)
Example 3saquinavir (Q422654) → LiverTox toxicity likelihood category D (Q83284515)
Example 4sunitinib (Q417542) → LiverTox toxicity likelihood category B (Q83284157)
Sourcehttps://www.ncbi.nlm.nih.gov/books/NBK547852/
Planned useAdd liver toxicity likelihood scores to items with LiverTox IDs
Number of IDs in source<~800
Expected completenesseventually complete (Q21873974)

Motivation edit

LiverTox is a high quality resource on liver toxicity information available from NCBI Bookshelf that consists mostly of unstructured information. However, the liver toxicity scores are pieces of defined, structured information buried within the unstructured text. Extracting these to Wikidata would make these scores easier to access, integrate, and use this information which is otherwise inaccessible in the LiverTox db. Gtsulab (talk) 19:44, 20 January 2020 (UTC)[reply]

Discussion edit

I also considered modeling this data as drug causes Hepatotoxicity with a qualifier rating (livertox likelihood score), but had two concerns doing it that way.

  • I was worried that the qualifier would be overlooked. There's a good reason for gatekeeping when it comes to medical information in Wikipedia/Wikidata, and it would be concerning if queries for hepatotoxic drugs overlooked the actual rating.
  • This seemed like information that could easily go into an infobox since it comes from a reputable public resource NIH/NCBI.

Of course, happy to reconsider if folks at

  Notified participants of WikiProject Medicine feel differently --Gtsulab (talk) 18:29, 21 January 2020 (UTC)[reply]

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