(Q21091085)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

Molecular phylogeny restores the supra-generic subdivision of homoscleromorph sponges (Porifera, Homoscleromorpha) (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

0 references

molecular phylogenetics

0 references

7

Dennis V Lavrov

Dennis V

Lavrov

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

6

Alexander V Ereskovsky

author given names

Alexander V

author last names

Ereskovsky

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1

Eve Gazave

Eve

Gazave

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

4

Jean Vacelet

Jean

Vacelet

1 reference

18 January 2020

8

Carole

Borchiellini

Carole Borchiellini

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Pascal Lapébie

2

Pascal

Lapébie

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Emmanuelle Renard

series ordinal

3

author given names

Emmanuelle

author last names

Renard

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Caroline Rocher

series ordinal

5

author given names

Caroline

author last names

Rocher

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

language of work or name

English

0 references

publication date

14 December 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

page(s)

e14290

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

18 January 2020

copyright license

start time

14 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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19 March 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

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The Trichoplax genome and the nature of placozoans

19 March 2017

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Broad phylogenomic sampling improves resolution of the animal tree of life

19 March 2017

1 reference

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jModelTest: phylogenetic model averaging

19 March 2017

1 reference

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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

19 March 2017

1 reference

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ProtTest: selection of best-fit models of protein evolution

19 March 2017

1 reference

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

19 March 2017

1 reference

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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

19 March 2017

1 reference

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MODELTEST: testing the model of DNA substitution

19 March 2017

1 reference

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The rapid generation of mutation data matrices from protein sequences

19 March 2017

1 reference

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Phylogenomics revives traditional views on deep animal relationships

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

Mitochondrial genome of the homoscleromorph Oscarella carmela (Porifera, Demospongiae) reveals unexpected complexity in the common ancestor of sponges and other animals

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

Secondary structure prediction for aligned RNA sequences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

Early evolution of animal cell signaling and adhesion genes

19 March 2017

1 reference

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PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

19 March 2017

1 reference

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Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments

7 April 2017

1 reference

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A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

7 April 2017

1 reference

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An approximately unbiased test of phylogenetic tree selection

7 April 2017

1 reference

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CONSEL: for assessing the confidence of phylogenetic tree selection

7 April 2017

2 references

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7 April 2017

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

12 September 2017

1 reference

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MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

7 April 2017

1 reference

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A new method for calculating evolutionary substitution rates

7 April 2017

1 reference

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WNT/beta-catenin signalling and epithelial patterning in the homoscleromorph sponge Oscarella

7 April 2017

1 reference

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The Homoscleromorph sponge Oscarella lobularis, a promising sponge model in evolutionary and developmental biology: model sponge Oscarella lobularis

12 September 2017

1 reference

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Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data

12 September 2017

1 reference

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Parallel tagged sequencing on the 454 platform

12 September 2017

1 reference

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Sequencing complete mitochondrial and plastid genomes

12 September 2017

1 reference

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Frequentist properties of Bayesian posterior probabilities of phylogenetic trees under simple and complex substitution models

12 September 2017

1 reference

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An evaluation of support for order-level monophyly and interrelationships within the class Demospongiae using partial data from the large subunit rDNA and cytochrome oxidase subunit I.

12 September 2017

1 reference

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Molecular phylogeny of Demospongiae: implications for classification and scenarios of character evolution

12 September 2017

1 reference

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Siliceous spicules and skeleton frameworks in sponges: origin, diversity, ultrastructural patterns, and biological functions.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

SOAP, cleaning multiple alignments from unstable blocks

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

Using the FASTA program to search protein and DNA sequence databases.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

Plastid genome phylogeny and a model of amino acid substitution for proteins encoded by chloroplast DNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

Mitochondrial genomes of two demosponges provide insights into an early stage of animal evolution

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

RNA-based phylogenetic methods: application to mammalian mitochondrial RNA sequences

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

High apparent rate of simultaneous compensatory base-pair substitutions in ribosomal RNA.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001884

A classification of the sponges

30 May 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Key transitions in animal evolution: a mitochondrial DNA perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Phylogenetic-signal dissection of nuclear housekeeping genes supports the paraphyly of sponges and the monophyly of Eumetazoa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Phylogeny and evolution of glass sponges (porifera, hexactinellida).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Sponges without skeleton: A new Mediterranean genus of Homoscleromorpha (Porifera, Demospongiae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Spongiaires de la Baie d'Amboine. (Voyage de MM. M. Bedot et C. Pictet dans l'archipel Malais.)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Phylogeny and evolution of calcareous sponges: monophyly of calcinea and calcaronea, high level of morphological homoplasy, and the primitive nature of axial symmetry

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Non-monophyly of most supraspecific taxa of calcareous sponges (Porifera, Calcarea) revealed by increased taxon sampling and partitioned Bayesian analysis of ribosomal DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

NK homeobox genes with choanocyte-specific expression in homoscleromorph sponges.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Sponge paraphyly and the origin of Metazoa

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Polyphyly of the genus Axinella and of the family Axinellidae (Porifera: Demospongiaep).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Confidence Limits on Phylogenies: an Approach using the Bootstrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

The systematics of Raspailiidae (Demospongiae: Poecilosclerida: Microcionina) re-analysed with a ribosomal marker

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Decline in Mesozoic reef-building sponges explained by silicon limitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21179486

12 December 2020

inferred from PubMed ID database lookup

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

7 January 2021

inferred from DOI database lookup

Taxonomic revision of the Mediterranean Plakina Schulze (Porifera, Demospongiae, Homoscleromorpha)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

7 January 2021

inferred from DOI database lookup

Mineral skeletogenesis in sponges

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0014290

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0014290

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

Australian Faunal Directory publication ID

18 January 2020

ADS bibcode

2010PLoSO...514290G

0 references

52b4a00d-01ca-4e31-8738-959d795229c7

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21179486%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

21179486

1 reference