(Q21145340)

16 August 2022

5

Michael I Jordan

Michael I

Jordan

1 reference

16 August 2022

Daniel Ting

1

Daniel

Ting

1 reference

16 August 2022

Guoli Wang

series ordinal

2

author given names

Guoli

author last names

Wang

1 reference

16 August 2022

Maxim Shapovalov

series ordinal

3

author given names

Maxim

author last names

Shapovalov

1 reference

16 August 2022

Rajib Mitra

series ordinal

4

author given names

Rajib

author last names

Mitra

1 reference

PLOS Computational Biology

16 August 2022

language of work or name

English

0 references

publication date

April 2010

0 references

published in

0 references

volume

6

0 references

issue

4

0 references

page(s)

e1000763

0 references

copyright license

Creative Commons Attribution 4.0 International

start time

29 April 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The Ramachandran plots of glycine and pre-proline

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

PISCES: recent improvements to a PDB sequence culling server

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Rotamer libraries in the 21st century

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Probability plotting methods for the analysis of data

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Knowledge-based protein secondary structure assignment

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Protein structure prediction using Rosetta

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

PISCES: a protein sequence culling server

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Conformation of Polypeptides and Proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Density Estimation for Protein Conformation Angles Using a Bivariate von Mises Distribution and Bayesian Nonparametrics.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Conformation dependence of backbone geometry in proteins.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Assessing side-chain perturbations of the protein backbone: a knowledge-based classification of residue Ramachandran space.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Statistical and conformational analysis of the electron density of protein side chains

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Computational basis of knowledge-based conformational probabilities derived from local- and long-range interactions in proteins.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Neighbor effect on PPII conformation in alanine peptides

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Main-chain conformational tendencies of amino acids

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Helix, sheet, and polyproline II frequencies and strong nearest neighbor effects in a restricted coil library

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

The Uppsala Electron-Density Server

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Modeling structurally variable regions in homologous proteins with rosetta.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Revisiting the Ramachandran plot: Hard‐sphere repulsion, electrostatics, and H‐bonding in the α‐helix

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Cyclic coordinate descent: A robotics algorithm for protein loop closure.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Conformations of amino acids in proteins.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

The Flory isolated-pair hypothesis is not valid for polypeptide chains: implications for protein folding

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Objectively judging the quality of a protein structure from a Ramachandran plot

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Bayesian statistical analysis of protein side-chain rotamer preferences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Experimentally observed conformation-dependent geometry and hidden strain in proteins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Loop modeling: Sampling, filtering, and scoring

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Beta-turns and their distortions: a proposed new nomenclature

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Influence of proline residues on protein conformation

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Influence of the local amino acid sequence upon the zones of the torsional angles phi and psi adopted by residues in proteins

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Differentiable, multi-dimensional, knowledge-based energy terms for torsion angle probabilities and propensities.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Protein-protein docking with backbone flexibility.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Importance of the CMAP correction to the CHARMM22 protein force field: dynamics of hen lysozyme

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Relationships between amino acid sequence and backbone torsion angle preferences.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Investigations into sequence and conformational dependence of backbone entropy, inter-basin dynamics and the Flory isolated-pair hypothesis for peptides

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Intrinsic phi, psi propensities of amino acids, derived from the coil regions of known structures

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2861699

Local propensities and statistical potentials of backbone dihedral angles in proteins

29 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/20442867

12 December 2020

inferred from PubMed ID database lookup

Bayesian statistical studies of the Ramachandran distribution

1 reference

https://pubmed.ncbi.nlm.nih.gov/20442867

12 December 2020

inferred from PubMed ID database lookup

Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs

1 reference

https://pubmed.ncbi.nlm.nih.gov/20442867

12 December 2020

inferred from PubMed ID database lookup

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000763

7 January 2021

Variational Inference for Dirichlet Process Mixtures

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000763

7 January 2021

A Bayesian Analysis of Some Nonparametric Problems

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000763

7 January 2021

Mixtures of Dirichlet Processes with Applications to Bayesian Nonparametric Problems

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000763

7 January 2021

On Bandwidth Variation in Kernel Estimates-A Square Root Law

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000763

7 January 2021

10.1371/JOURNAL.PCBI.1000763

Identifiers

DOI

1 reference

journals/ploscb/TingWSMJD10

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_meaqw2kb3jeh5g4umjnyp54hym

28 January 2021

Fatcat ID

0 references

1 reference

1 reference

1 reference