(Q21146716)

English

The chloroplast genomes of Bryopsis plumosa and Tydemania expeditiones (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin

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scholarly article

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The chloroplast genomes of Bryopsis plumosa and Tydemania expeditiones (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin (English)

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Bryopsis plumosa

object named as

Bryopsis plumosa

1 reference

based on heuristic

inferred from title

Frederik Leliaert

object named as

Frederik Leliaert

1

author given names

Frederik

author last names

Leliaert

1 reference

Dimensions Publication ID

17 August 2022

author name string

Juan M Lopez-Bautista

2

author given names

Juan M

author last names

Lopez-Bautista

1 reference

Dimensions Publication ID

17 August 2022

language of work or name

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publication date

2015

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16

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1

0 references

204

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copyright license

Creative Commons Attribution 4.0 International

17 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

The complete chloroplast and mitochondrial genomes of the green macroalga Ulva sp. UNA00071828 (Ulvophyceae, Chlorophyta)

1 reference

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19 March 2017

The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

19 March 2017

The mitochondrial and plastid genomes of Volvox carteri: bloated molecules rich in repetitive DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

19 March 2017

Gain and loss of elongation factor genes in green algae

1 reference

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19 March 2017

Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

19 March 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

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19 March 2017

The chloroplast genome sequence of the green alga Leptosira terrestris: multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae

1 reference

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19 March 2017

An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters

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19 March 2017

The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands

1 reference

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19 March 2017

The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes

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19 March 2017

The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales

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19 March 2017

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19 March 2017

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

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19 March 2017

The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes

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19 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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19 March 2017

Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division

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19 March 2017

Complete sequence of Euglena gracilis chloroplast DNA

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19 March 2017

Rho-independent termination: dyad symmetry in DNA causes RNA polymerase to pause during transcription in vitro

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19 March 2017

The Chloroplast Genomes of the Green Algae Pyramimonas, Monomastix, and Pycnococcus Shed New light on the Evolutionary History of Prasinophytes and the Origin of the Secondary Chloroplasts of Euglenids

1 reference

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19 March 2017

The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages

1 reference

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19 March 2017

A rapid bootstrap algorithm for the RAxML Web servers

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19 March 2017

Clustal W and Clustal X version 2.0

1 reference

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19 March 2017

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

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19 March 2017

MrBayes 3: Bayesian phylogenetic inference under mixed models

1 reference

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19 March 2017

EMBOSS: the European Molecular Biology Open Software Suite

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19 March 2017

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

19 March 2017

Tandem repeats finder: a program to analyze DNA sequences

1 reference

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19 March 2017

Comparative and functional anatomy of group II catalytic introns--a review

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19 March 2017

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility

1 reference

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19 March 2017

Nested in the Chlorellales or Independent Class? Phylogeny and Classification of the Pedinophyceae (Viridiplantae) Revealed by Molecular Phylogenetic Analyses of Complete Nuclear and Plastid-encoded rRNA Operons

1 reference

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7 April 2017

Mauve: multiple alignment of conserved genomic sequence with rearrangements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

7 April 2017

Mobile elements: drivers of genome evolution

1 reference

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7 April 2017

progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

7 April 2017

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

7 April 2017

Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Chloroplast phylogenomic analysis resolves deep-level relationships within the green algal class Trebouxiophyceae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Plastid and mitochondrion genomic sequences from Arctic Chlorella sp. ArM0029B

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Analyses of charophyte chloroplast genomes help characterize the ancestral chloroplast genome of land plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

The case of horizontal gene transfer from bacteria to the peculiar dinoflagellate plastid genome

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Tracing the evolution of streptophyte algae and their mitochondrial genome

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Invasion is a community affair: Clandestine followers in the bacterial community associated to green algae, Caulerpa racemosa, track the invasion source.

1 reference

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12 September 2017

Host specificity and coevolution of Flavobacteriaceae endosymbionts within the siphonous green seaweed Bryopsis

1 reference

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12 September 2017

Mitochondrial and plastid genomes of the colonial green alga Gonium pectorale give insights into the origins of organelle DNA architecture within the volvocales

1 reference

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12 September 2017

An rhs gene of Pseudomonas aeruginosa encodes a virulence protein that activates the inflammasome.

1 reference

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12 September 2017

Who is in there? Exploration of endophytic bacteria within the siphonous green seaweed Bryopsis (Bryopsidales, Chlorophyta).

1 reference

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12 September 2017

The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape

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12 September 2017

The Bryopsis hypnoides plastid genome: multimeric forms and complete nucleotide sequence

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Complex phylogenetic distribution of a non-canonical genetic code in green algae

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

The exceptionally large chloroplast genome of the green alga Floydiella terrestris illuminates the evolutionary history of the Chlorophyceae

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12 September 2017

Evolution and cytological diversification of the green seaweeds (Ulvophyceae).

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12 September 2017

Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement

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12 September 2017

A multi-locus time-calibrated phylogeny of the siphonous green algae

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12 September 2017

Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Efficient sorting of genomic permutations by translocation, inversion and block interchange

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

The treasure trove of algal chloroplast genomes. Surprises in architecture and gene content, and their functional implications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection

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12 September 2017

Comparative architecture of transposase and integrase complexes

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Organization of ribosomal protein genes rpl23, rpl2, rps19, rpl22 and rps3 on the Euglena gracilis chloroplast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

12 September 2017

Bacteriophage P4 DNA replication.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

27 September 2017

Similarity of reverse transcriptase-like sequences of viruses, transposable elements, and mitochondrial introns

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

27 September 2017

Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

30 May 2018

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30 May 2018

The chloroplast genome of the green alga Schizomeris leibleinii (Chlorophyceae) provides evidence for bidirectional DNA replication from a single origin in the chaetophorales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

30 May 2018

The chloroplast genomes of the green algae Pedinomonas minor, Parachlorella kessleri, and Oocystis solitaria reveal a shared ancestry between the Pedinomonadales and Chlorellales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

30 May 2018

A large open reading frame (orf1995) in the chloroplast DNA of Chlamydomonas reinhardtii encodes an essential protein

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30 May 2018

Control of plastid gene expression: 3' inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription.

1 reference

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30 May 2018

An ancient group I intron shared by eubacteria and chloroplasts

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30 May 2018

Permanent residents or temporary lodgers: characterizing intracellular bacterial communities in the siphonous green alga Bryopsis.

1 reference

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29 November 2018

Chloroplast gene arrangement variation within a closely related group of green algae (Trebouxiophyceae, Chlorophyta).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

29 November 2018

Evidence for horizontal gene transfer from bacteroidetes bacteria to dinoflagellate minicircles.

1 reference

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29 November 2018

Green-colored plastids in the dinoflagellate genus Lepidodinium are of core chlorophyte origin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

29 November 2018

The distribution of Elongation Factor-1 Alpha (EF-1alpha), Elongation Factor-Like (EFL), and a non-canonical genetic code in the ulvophyceae: discrete genetic characters support a consistent phylogenetic framework.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4487195

29 November 2018

The chloroplast genome sequence of Chara vulgaris sheds new light into the closest green algal relatives of land plants

1 reference

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29 November 2018

The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats

1 reference

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29 November 2018

Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids.

1 reference

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29 November 2018

Short dispersed repeats in the Chlamydomonas chloroplast genome are collocated with sites for mRNA 3' end formation

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Morphology and Phylogenetic Position of the Freshwater Green Microalgae Chlorochytrium (Chlorophyceae) and Scotinosphaera (Scotinosphaerales, ord. nov., Ulvophyceae).

1 reference

https://pubmed.ncbi.nlm.nih.gov/25879186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ANALYSIS OF A PLASTID MULTIGENE DATA SET AND THE PHYLOGENETIC POSITION OF THE MARINE MACROALGA CAULERPA FILIFORMIS (CHLOROPHYTA)(1).

1 reference

https://pubmed.ncbi.nlm.nih.gov/25879186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unusual characteristics of Codium fragile chloroplast DNA revealed by physical and gene mapping

1 reference

https://pubmed.ncbi.nlm.nih.gov/25879186

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogeny and Molecular Evolution of the Green Algae

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1418-3

7 January 2021

based on heuristic

inferred from DOI database lookup

Systematics of the marine microfilamentous green algae Uronema curvatum and Urospora microscopica (Chlorophyta)

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1418-3

7 January 2021

based on heuristic

inferred from DOI database lookup

Tetraselmis indica(Chlorodendrophyceae, Chlorophyta), a new species isolated from salt pans in Goa, India

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1418-3

7 January 2021

based on heuristic

inferred from DOI database lookup

Origins and Evolution of Retrotransposons

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-1418-3

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1186/S12864-015-1418-3

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-015-1418-3

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