(Q24791695)

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Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

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scholarly article

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Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs) (English)

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genome annotation

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based on heuristic

inferred from title

6

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5

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L Aravind

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author name string

D A Natale

1

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U T Shankavaram

2

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M Y Galperin

3

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Y I Wolf

4

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L Aravind

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publication date

2000

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1

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5

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RESEARCH0009

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Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs)

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An archaeal genomic signature

1 reference

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SMART: a web-based tool for the study of genetically mobile domains

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KEGG: kyoto encyclopedia of genes and genomes

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DNA-binding proteins and evolution of transcription regulation in the archaea

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Conserved domains in DNA repair proteins and evolution of repair systems

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A genomic perspective on protein families

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The COG database: a tool for genome-scale analysis of protein functions and evolution

1 reference

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Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.

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Using the COG database to improve gene recognition in complete genomes

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Two family B DNA polymerases from Aeropyrum pernix, an aerobic hyperthermophilic crenarchaeote.

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based on heuristic

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1 reference

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based on heuristic

inferred from PubMed ID database lookup

Non-orthologous gene displacement

1 reference

https://pubmed.ncbi.nlm.nih.gov/11178258

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/GB-2000-1-5-RESEARCH0009

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