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Interplay between gene expression noise and regulatory network architecture
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title
Interplay between gene expression noise and regulatory network architecture
(English)
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author
Aravind L Iyer
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L. Aravind
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5
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author name string
Guilhem Chalancon
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1
1 reference
stated in
Crossref
Charles N.J. Ravarani
series ordinal
2
1 reference
stated in
Crossref
S. Balaji
series ordinal
3
1 reference
stated in
Crossref
Alfonso Martinez-Arias
series ordinal
4
1 reference
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Raja Jothi
series ordinal
6
1 reference
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Crossref
M. Madan Babu
series ordinal
7
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language of work or name
English
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PubMed
publication date
May 2012
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PubMed
published in
Trends in Genetics
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PubMed
volume
28
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PubMed
issue
5
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PubMed
page(s)
221-32
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PubMed
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Stochasticity and cell fate
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Modular cell biology: retroactivity and insulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Noise propagation and signaling sensitivity in biological networks: a role for positive feedback
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Variability and robustness in biomolecular systems
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Myeloid lineage commitment from the hematopoietic stem cell
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Tunability and noise dependence in differentiation dynamics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Stochastic gene expression: from single molecules to the proteome
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
retrieved
28 September 2017
Stochastic spineless expression creates the retinal mosaic for colour vision.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Filtering transcriptional noise during development: concepts and mechanisms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Contributions of low molecule number and chromosomal positioning to stochastic gene expression
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Noise propagation in gene networks
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stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Ultrasensitivity and noise propagation in a synthetic transcriptional cascade.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Genomic analysis of regulatory network dynamics reveals large topological changes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Mechanisms of non-Mendelian inheritance in genetic disease
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Negative autoregulation speeds the response times of transcription networks
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 September 2017
Predicting mutation outcome from early stochastic variation in genetic interaction partners.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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31 May 2018
Probing cellular protein complexes using single-molecule pull-down
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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31 May 2018
Translation's coming of age.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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31 May 2018
Adaptation by stochastic switching of a monostable genetic circuit in Escherichia coli
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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31 May 2018
Functional organisation of Escherichia coli transcriptional regulatory network
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stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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31 May 2018
Selection to minimise noise in living systems and its implications for the evolution of gene expression
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
retrieved
31 May 2018
PhoU is a persistence switch involved in persister formation and tolerance to multiple antibiotics and stresses in Escherichia coli
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
retrieved
31 May 2018
Notch signalling in development: on equivalence groups and asymmetric developmental potential
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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31 May 2018
Non-genetic individuality: chance in the single cell
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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31 May 2018
Dissecting ensemble networks in ES cell populations reveals micro-heterogeneity underlying pluripotency
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 November 2018
Architecture-dependent noise discriminates functionally analogous differentiation circuits.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 November 2018
Intrinsic variability of gene expression encoded in nucleosome positioning sequences.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 November 2018
Information capacity of genetic regulatory elements
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 November 2018
Stochastic switching as a survival strategy in fluctuating environments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 November 2018
Dissecting timing variability in yeast meiosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 November 2018
Spatial and temporal specification of neural fates by transcription factor codes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
retrieved
28 November 2018
Evolution of chromosome organization driven by selection for reduced gene expression noise
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
retrieved
28 November 2018
A multistep epigenetic switch enables the stable inheritance of DNA methylation states.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 November 2018
A computational analysis of the impact of the transient genetic imbalance on compartmentalized gene expression during sporulation in Bacillus subtilis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
retrieved
28 November 2018
Stochastic protein expression in individual cells at the single molecule level
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 November 2018
Phenotypic diversity, population growth, and information in fluctuating environments.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3340541
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28 November 2018
Systems biology. Attractors and democratic dynamics
1 reference
stated in
PubMed
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https://pubmed.ncbi.nlm.nih.gov/22365642
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Nanobiotechnology: Scaling up synthetic gene circuits
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22365642
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Dynamical effects of transcriptional pause-prone sites
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/22365642
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.TIG.2012.01.006
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
85492
OpenCitations bibliographic resource ID
85492
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
85492
PMC publication ID
3340541
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
85492
PubMed publication ID
22365642
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
85492
ResearchGate publication ID
221861946
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