(Q27316939)

English

Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance

scientific article

Models for the a subunits of theThermus thermophilusV/A-ATPase andSaccharomyces cerevisiaeV-ATPase enzymes by cryo-EM and evolutionary covariance

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26951669%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26951669%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Saccharomyces cerevisiae

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cryogenic electron microscopy

0 references

Thermus thermophilus

object named as

Thermus thermophilus

1 reference

based on heuristic

inferred from title

2

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26951669%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

John L. Rubinstein

3

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Europe PubMed Central

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10 March 2020

author name string

Daniel G Schep

1

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10 March 2020

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publication date

7 March 2016

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10 March 2020

Proceedings of the National Academy of Sciences of the United States of America

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Europe PubMed Central

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10 March 2020

113

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26951669%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

12

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26951669%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

3245-3250

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26951669%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Validating maps from single particle electron cryomicroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Origin of asymmetry at the intersubunit interfaces of V1-ATPase from Thermus thermophilus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Crystal Structure of the Yeast Vacuolar ATPase Heterotrimeric EGChead Peripheral Stalk Complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Three-dimensional structures of membrane proteins from genomic sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Subnanometre-resolution structure of the intact Thermus thermophilus H+-driven ATP synthase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Protein 3D structure computed from evolutionary sequence variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Crystal Structure of the Cytoplasmic N-Terminal Domain of Subunit I, a Homolog of Subunit a, of V-ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

The structure of the peripheral stalk of Thermus thermophilus H+-ATPase/synthase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Crystal structure of a central stalk subunit C and reversible association/dissociation of vacuole-type ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Mutations in ATP6N1B, encoding a new kidney vacuolar proton pump 116-kD subunit, cause recessive distal renal tubular acidosis with preserved hearing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Mutations in the gene encoding B1 subunit of H+-ATPase cause renal tubular acidosis with sensorineural deafness

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Correlated mutations and residue contacts in proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Accurate determination of local defocus and specimen tilt in electron microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Site-directed mutagenesis of the 100-kDa subunit (Vph1p) of the yeast vacuolar (H+)-ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

STV1 gene encodes functional homologue of 95-kDa yeast vacuolar H(+)-ATPase subunit Vph1p

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Defects in TCIRG1 subunit of the vacuolar proton pump are responsible for a subset of human autosomal recessive osteopetrosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Regulation of plasma membrane V-ATPase activity by dissociation of peripheral subunits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Disassembly and reassembly of the yeast vacuolar H(+)-ATPase in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

An improved cryogen for plunge freezing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

Association of two proteolipids of unknown function with ATP synthase from bovine heart mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

21 March 2017

RELION: implementation of a Bayesian approach to cryo-EM structure determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

7 April 2017

Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

7 April 2017

https://api.crossref.org/works/10.1073%2FPNAS.1521990113

22 April 2017

The Phyre2 web portal for protein modeling, prediction and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

7 April 2017

Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

7 April 2017

Comparative protein structure modeling using Modeller

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

7 April 2017

Vacuolar ATPases: rotary proton pumps in physiology and pathophysiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

7 April 2017

Visualizing density maps with UCSF Chimera

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

7 April 2017

Protein structure prediction using Rosetta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

7 April 2017

Structure of ATP synthase from Paracoccus denitrificans determined by X-ray crystallography at 4.0 Å resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Structure and conformational states of the bovine mitochondrial ATP synthase by cryo-EM.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Alignment of cryo-EM movies of individual particles by optimization of image translations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Description and comparison of algorithms for correcting anisotropic magnification in cryo-EM images

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Fabrication of carbon films with ∼ 500nm holes for cryo-EM with a direct detector device.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Arrangement of subunits in intact mammalian mitochondrial ATP synthase determined by cryo-EM.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Definition of membrane topology and identification of residues important for transport in subunit a of the vacuolar ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Structure of intact Thermus thermophilus V-ATPase by cryo-EM reveals organization of the membrane-bound V(O) motor.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Refinement of protein structures into low-resolution density maps using rosetta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Transmembrane protein topology prediction using support vector machines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Function of a subunit isoforms of the V-ATPase in pH homeostasis and in vitro invasion of MDA-MB231 human breast cancer cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Analysis of the membrane topology of transmembrane segments in the C-terminal hydrophobic domain of the yeast vacuolar ATPase subunit a (Vph1p) by chemical modification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Identification of membrane proteins by tandem mass spectrometry of protein ions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Structure of the rotor of the V-Type Na+-ATPase from Enterococcus hirae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Renal vacuolar H+-ATPase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Arg-735 of the 100-kDa subunit a of the yeast V-ATPase is essential for proton translocation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

ATP synthase: an electrochemical transducer with rotatory mechanics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

The essential arginine residue at position 210 in the alpha subunit of the Escherichia coli ATP synthase can be transferred to position 252 with partial retention of activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Osteoclastic bone resorption by a polarized vacuolar proton pump

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 September 2017

Quantifying the local resolution of cryo-EM density maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

31 May 2018

TMaCS: a hybrid template matching and classification system for partially-automated particle selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

31 May 2018

Structural differences between thermophilic and mesophilic membrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

31 May 2018

Interaction between Glu-219 and His-245 within the a subunit of F1F0-ATPase in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

31 May 2018

Horizontal membrane-intrinsic α-helices in the stator a-subunit of an F-type ATP synthase.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1521990113

21 January 2018

Vma9p need not be associated with the yeast V-ATPase for fully-coupled proton pumping activity in vitro.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1521990113

21 January 2018

Interacting helical surfaces of the transmembrane segments of subunits a and c' of the yeast V-ATPase defined by disulfide-mediated cross-linking

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1521990113

21 January 2018

A model for the proteolipid ring and bafilomycin/concanamycin-binding site in the vacuolar ATPase of Neurospora crassa

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1521990113

21 January 2018

Subunit a of the yeast V-ATPase participates in binding of bafilomycin

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1521990113

21 January 2018

Subunit arrangement in V-ATPase from Thermus thermophilus

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1521990113

21 January 2018

Angle determination for side views in single particle electron microscopy

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1521990113

21 January 2018

A mechanism of proton translocation by F1F0 ATP synthases suggested by double mutants of the a subunit.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812769

28 November 2018

Transmembrane topography of the 100-kDa a subunit (Vph1p) of the yeast vacuolar proton-translocating ATPase

1 reference

https://pubmed.ncbi.nlm.nih.gov/26951669

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Function of the COOH-terminal domain of Vph1p in activity and assembly of the yeast V-ATPase

1 reference

https://pubmed.ncbi.nlm.nih.gov/26951669

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Modeling of transmembrane seven helix bundles

1 reference

https://pubmed.ncbi.nlm.nih.gov/26951669

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.1521990113

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26951669%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

2016PNAS..113.3245S

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26951669%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26951669%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

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