(Q27334291)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

title

Modeling conformational ensembles of slow functional motions in Pin1-WW (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1

1 reference

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18 January 2020

Roberto López-Rendón

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

Mária-Magdolna Ercsey-Ravasz

18 January 2020

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Matthew P. Jacobson

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

author name string

Santanu Chatterjee

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Christopher L McClendon

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Paul R Brenner

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

John Zintsmaster

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Christopher R Sweet

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Jeffrey W Peng

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Jesús A Izaguirre

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

language of work or name

English

0 references

publication date

2 December 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

PLOS Computational Biology

18 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

volume

6

1 reference

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18 January 2020

issue

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

page(s)

e1001015

1 reference

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Creative Commons Attribution 4.0 International

18 January 2020

copyright license

start time

2 December 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Structures of invisible, excited protein states by relaxation dispersion NMR spectroscopy

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Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

21 March 2017

1 reference

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Structure-function-folding relationship in a WW domain

21 March 2017

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 March 2017

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Network of coupled promoting motions in enzyme catalysis

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

1H NMR study on the binding of Pin1 Trp-Trp domain with phosphothreonine peptides

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Structural and functional analysis of the mitotic rotamase Pin1 suggests substrate recognition is phosphorylation dependent

21 March 2017

1 reference

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Scalable molecular dynamics with NAMD

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Assembly of Cell Regulatory Systems Through Protein Interaction Domains

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

21 March 2017

1 reference

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Funnels, pathways, and the energy landscape of protein folding: a synthesis

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Enhanced modeling via network theory: Adaptive sampling of Markov state models

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Protein folded states are kinetic hubs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Toward a unified representation of protein structural dynamics in solution.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Rapid equilibrium sampling initiated from nonequilibrium data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Progress and challenges in the automated construction of Markov state models for full protein systems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Using generalized ensemble simulations and Markov state models to identify conformational states

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Self-consistent residual dipolar coupling based model-free analysis for the robust determination of nanosecond to microsecond protein dynamics.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Conformational changes below the Tm: molecular dynamics studies of the thermal pretransition of ribonuclease A

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

On the benefit of bivalency in peptide ligand/pin1 interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Molecular dynamics simulations of the native and partially folded states of ubiquitin: influence of methanol cosolvent, pH, and temperature on the protein structure and dynamics.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Characterization of the dynamics of biomacromolecules using rotating-frame spin relaxation NMR spectroscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

New tools provide new insights in NMR studies of protein dynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Protein folding pathways from replica exchange simulations and a kinetic network model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

NMR studies of protein structure and dynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

29 September 2017

1 reference

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On the simulation of protein folding by short time scale molecular dynamics and distributed computing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

The WW domain: linking cell signalling to the membrane cytoskeleton

29 September 2017

1 reference

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NeW wrinkles for an old domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Global optimization of clusters, crystals, and biomolecules.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

Conformational backbone dynamics of the cyclic decapeptide antamanide. Application of a new multiconformational search algorithm based on NMR data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2996313

29 September 2017

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001015

Disulfide Bond Isomerization in Basic Pancreatic Trypsin Inhibitor: Multisite Chemical Exchange Quantified by CPMG Relaxation Dispersion and Chemical Shift Modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001015

Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001015

A Set of Measures of Centrality Based on Betweenness

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001015

Peptide binding induces large scale changes in inter-domain mobility in human Pin1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1001015

Generalized correlation for biomolecular dynamics

21 January 2018

1 reference

12 December 2020

Low barrier kinetics: dependence on observables and free energy surface

1 reference

12 December 2020

Molecular dynamics simulations of protein G challenge NMR-derived correlated backbone motions

1 reference

12 December 2020

NMR characterization of the dynamics of biomacromolecules

1 reference

12 December 2020

Sequence-specific dynamics modulate recognition specificity in WW domains

1 reference

12 December 2020

Structure and dynamics of two beta-peptides in solution from molecular dynamics simulations validated against experiment

1 reference

12 December 2020

Substrate recognition reduces side-chain flexibility for conserved hydrophobic residues in human Pin1

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1001015

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/MorcosCMBLZESJPI10

18 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21152000%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

21152000

1 reference