(Q27670934)

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The Structure of DNA-Bound Human Topoisomerase II Alpha: Conformational Mechanisms for Coordinating Inter-Subunit Interactions with DNA Cleavage

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9 February 2020

The structure of DNA-bound human topoisomerase II alpha: conformational mechanisms for coordinating inter-subunit interactions with DNA cleavage (English)

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9 February 2020

Timothy Wendorff

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9 February 2020

Caroline Austin

4

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9 February 2020

James M. Berger

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object named as

James M Berger

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9 February 2020

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Bryan H Schmidt

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9 February 2020

Pauline Heslop

3

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9 February 2020

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25 July 2012

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9 February 2020

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16

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Journal of Molecular Biology

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9 February 2020

424

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9 February 2020

3-4

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9 February 2020

109-124

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9 February 2020

Structural basis of type II topoisomerase inhibition by the anticancer drug etoposide

1 reference

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20 March 2017

Structural basis of quinolone inhibition of type IIA topoisomerases and target-mediated resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Type IIA topoisomerase inhibition by a new class of antibacterial agents

1 reference

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20 March 2017

A domain insertion in Escherichia coli GyrB adopts a novel fold that plays a critical role in gyrase function

1 reference

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20 March 2017

Structural basis of gate-DNA breakage and resealing by type II topoisomerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

A novel and unified two-metal mechanism for DNA cleavage by type II and IA topoisomerases

1 reference

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20 March 2017

PHENIX: a comprehensive Python-based system for macromolecular structure solution

1 reference

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20 March 2017

MolProbity: all-atom structure validation for macromolecular crystallography

1 reference

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20 March 2017

Crystal structure of the DNA gyrase GyrA N-terminal domain fromMycobacterium tuberculosis

1 reference

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20 March 2017

Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Resolution of sister centromeres requires RanBP2-mediated SUMOylation of topoisomerase IIalpha

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Crystal structure of an intact type II DNA topoisomerase: insights into DNA transfer mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Structural basis for gate-DNA recognition and bending by type IIA topoisomerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Breakage-reunion domain of Streptococcus pneumoniae topoisomerase IV: crystal structure of a gram-positive quinolone target

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Mutagenesis of E477 or K505 in the B' domain of human topoisomerase II beta increases the requirement for magnesium ions during strand passage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Crystal structure of the breakage-reunion domain of DNA gyrase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Structure and mechanism of DNA topoisomerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Characterization and immunological identification of cDNA clones encoding two human DNA topoisomerase II isozymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Overview of the CCP4 suite and current developments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Features and development of Coot

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Phasercrystallographic software

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Optimal description of a protein structure in terms of multiple groups undergoing TLS motion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

Genetic pathways in therapy-related myelodysplasia and acute myeloid leukemia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

DNA topoisomerases and their poisoning by anticancer and antibacterial drugs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

SUMO: a history of modification

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

7 April 2017

Aberrant lamination in the cerebral cortex of mouse embryos lacking DNA topoisomerase IIbeta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

20 March 2017

SUMO-1 conjugation in vivo requires both a consensus modification motif and nuclear targeting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

7 April 2017

Model for MLL translocations in therapy-related leukemia involving topoisomerase IIβ-mediated DNA strand breaks and gene proximity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

The ancestral role of ATP hydrolysis in type II topoisomerases: prevention of DNA double-strand breaks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Direct measurement of DNA bending by type IIA topoisomerases: implications for non-equilibrium topology simplification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Interactions between the etoposide derivative F14512 and human type II topoisomerases: implications for the C4 spermine moiety in promoting enzyme-mediated DNA cleavage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

PIASy-dependent SUMOylation regulates DNA topoisomerase IIalpha activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Metal ion interactions in the DNA cleavage/ligation active site of human topoisomerase IIalpha

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

SUMO modification of DNA topoisomerase II: trying to get a CENse of it all

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

The DNA cleavage reaction of topoisomerase II: wolf in sheep's clothing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

An equivalent metal ion in one- and two-metal-ion catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

The efficacy of topoisomerase II-targeted anticancer agents reflects the persistence of drug-induced cleavage complexes in cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

DNA topoisomerases: harnessing and constraining energy to govern chromosome topology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

NK314, a topoisomerase II inhibitor that specifically targets the alpha isoform.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Substituents on etoposide that interact with human topoisomerase IIalpha in the binary enzyme-drug complex: contributions to etoposide binding and activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Topoisomerase IIbeta negatively modulates retinoic acid receptor alpha function: a novel mechanism of retinoic acid resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Topoisomerase II - drug interaction domains: identification of substituents on etoposide that interact with the enzyme.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Roles of DNA topoisomerase II isozymes in chemotherapy and secondary malignancies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Origin and evolution of DNA topoisomerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

A topoisomerase IIbeta-mediated dsDNA break required for regulated transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Protein database searches using compositionally adjusted substitution matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Topoisomerase IV bends and overtwists DNA upon binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Biochemical modulation of Cisplatin mechanisms of action: enhancement of antitumor activity and circumvention of drug resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Co-localization of chicken DNA topoisomerase IIalpha, but not beta, with sites of DNA replication and possible involvement of a C-terminal region of alpha through its binding to PCNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Leukemias related to treatment with DNA topoisomerase II inhibitors

1 reference

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29 September 2017

Topoisomerase II drives DNA transport by hydrolyzing one ATP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Etoposide targets topoisomerase IIalpha and IIbeta in leukemic cells: isoform-specific cleavable complexes visualized and quantified in situ by a novel immunofluorescence technique

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

DNA transport by a type II topoisomerase: direct evidence for a two-gate mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

29 September 2017

Novel HeLa topoisomerase II is the II beta isoform: complete coding sequence and homology with other type II topoisomerases.

1 reference

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29 September 2017

Cloning and sequencing of cDNA encoding human DNA topoisomerase II and localization of the gene to chromosome region 17q21-22

1 reference

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29 September 2017

Isolation and characterization of a human cDNA clone encoding a novel DNA topoisomerase II homologue from HeLa cells.

1 reference

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29 September 2017

Crystal structure of an N-terminal fragment of the DNA gyrase B protein.

1 reference

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29 September 2017

Site-specific cleavage of DNA by E. coli DNA gyrase

1 reference

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29 September 2017

T4 DNA topoisomerase: a new ATP-dependent enzyme essential for initiation of T4 bacteriophage DNA replication

1 reference

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29 September 2017

DNA gyrase: an enzyme that introduces superhelical turns into DNA

1 reference

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29 September 2017

Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements

1 reference

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2 June 2018

Molecular cloning of partial cDNAs for rat DNA topoisomerase II isoforms and their differential expression in brain development

1 reference

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2 June 2018

Proliferation-associated nuclear antigen Ki-S1 is identical with topoisomerase II alpha. Delineation of a carboxy-terminal epitope with peptide antibodies

1 reference

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2 June 2018

Characterization of the reactions of platinum antitumor agents with biologic and nonbiologic sulfur-containing nucleophiles.

1 reference

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2 June 2018

Biochemical and pharmacological properties of p170 and p180 forms of topoisomerase II.

1 reference

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2 June 2018

Different patterns of gene expression of topoisomerase II isoforms in differentiated tissues during murine development

1 reference

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2 June 2018

Determinants of Response to the DNA Topoisomerase II Inhibitors Doxorubicin and Etoposide in Human Lung Cancer Cell Lines

1 reference

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2 June 2018

Expression and purification of soluble His(6)-tagged TEV protease

1 reference

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27 November 2018

The structural basis for substrate specificity in DNA topoisomerase IV.

1 reference

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27 November 2018

Suite of three protein crystallography beamlines with single superconducting bend magnet as the source.

1 reference

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27 November 2018

The path of the DNA along the dimer interface of topoisomerase II.

1 reference

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27 November 2018

The role of GyrB in the DNA cleavage-religation reaction of DNA gyrase: a proposed two metal-ion mechanism

1 reference

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27 November 2018

DNA topoisomerase VI generates ATP-dependent double-strand breaks with two-nucleotide overhangs

1 reference

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27 November 2018

Involvement of DNA topoisomerase IIbeta in neuronal differentiation

1 reference

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27 November 2018

Quantitation of DNA topoisomerase IIalpha and beta in human leukaemia cells by immunoblotting.

1 reference

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27 November 2018

Probing the two-gate mechanism of DNA gyrase using cysteine cross-linking.

1 reference

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27 November 2018

Clinical resistance to topoisomerase-targeted drugs.

1 reference

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27 November 2018

Mechanistic studies of amsacrine-resistant derivatives of DNA topoisomerase II. Implications in resistance to multiple antitumor drugs targeting the enzyme.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3584591

27 November 2018

The SUMO-1 isopeptidase Smt4 is linked to centromeric cohesion through SUMO-1 modification of DNA topoisomerase II

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The capture of a DNA double helix by an ATP-dependent protein clamp: a key step in DNA transport by type II DNA topoisomerases

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationship between topoisomerase II level and chemosensitivity in human tumor cell lines

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Topoisomerase IIbeta mediated DNA double-strand breaks: implications in doxorubicin cardiotoxicity and prevention by dexrazoxane

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Covalent bonds between protein and DNA. Formation of phosphotyrosine linkage between certain DNA topoisomerases and DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vitro catenation and decatenation of DNA and a novel eucaryotic ATP-dependent topoisomerase

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Yeast DNA topoisomerase II. An ATP-dependent type II topoisomerase that catalyzes the catenation, decatenation, unknotting, and relaxation of double-stranded DNA rings

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA transport by a type II DNA topoisomerase: evidence in favor of a two-gate mechanism

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pre-steady-state analysis of ATP hydrolysis by Saccharomyces cerevisiae DNA topoisomerase II. 2. Kinetic mechanism for the sequential hydrolysis of two ATP

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Secondary leukemias induced by topoisomerase-targeted drugs

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Essential mitotic functions of DNA topoisomerase IIalpha are not adopted by topoisomerase IIbeta in human H69 cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/22841979

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2012.07.014

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22841979%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22841979%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

PubMed publication ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22841979%20AND%20SRC:MED&resulttype=core&format=json

9 February 2020

ResearchGate publication ID

0 references

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