(Q35120752)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21421557%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

title

Direct measurement of DNA bending by type IIA topoisomerases: implications for non-equilibrium topology simplification (English)

1 reference

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26 January 2020

6

1 reference

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26 January 2020

5

Neil Osheroff

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21421557%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

author name string

Ashley H Hardin

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21421557%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Susanta K Sarkar

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21421557%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

Yeonee Seol

3

1 reference

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26 January 2020

Grace F Liou

4

1 reference

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26 January 2020

language of work or name

English

0 references

publication date

17 March 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21421557%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

published in

Nucleic Acids Research

1 reference

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26 January 2020

volume

39

1 reference

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26 January 2020

issue

13

1 reference

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26 January 2020

page(s)

5729-5743

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21421557%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 3.0 Unported

26 January 2020

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3141238/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Structural basis of gate-DNA breakage and resealing by type II topoisomerases

28 July 2018

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A novel and unified two-metal mechanism for DNA cleavage by type II and IA topoisomerases

28 July 2018

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Local site preference rationalizes disentangling by DNA topoisomerases

28 July 2018

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Specific DNA-protein interactions on mica investigated by atomic force microscopy.

28 July 2018

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Structural insight into the quinolone-DNA cleavage complex of type IIA topoisomerases

28 July 2018

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Theoretical models of DNA topology simplification by type IIA DNA topoisomerases

28 July 2018

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Mechanisms of chiral discrimination by topoisomerase IV

28 July 2018

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The why and how of DNA unlinking

28 July 2018

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How do type II topoisomerases use ATP hydrolysis to simplify DNA topology beyond equilibrium? Investigating the relaxation reaction of nonsupercoiling type II topoisomerases

28 July 2018

1 reference

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Electrostatics of DNA-DNA juxtapositions: consequences for type II topoisomerase function

28 July 2018

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The DNA cleavage reaction of topoisomerase II: wolf in sheep's clothing

28 July 2018

1 reference

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DNA topoisomerases: harnessing and constraining energy to govern chromosome topology

28 July 2018

1 reference

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Structural basis for gate-DNA recognition and bending by type IIA topoisomerases

28 July 2018

1 reference

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Statistical data analysis in the computer age.

28 July 2018

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Holoenzyme assembly and ATP-mediated conformational dynamics of topoisomerase VI

28 July 2018

1 reference

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Energy coupling in type II topoisomerases: why do they hydrolyze ATP?

28 July 2018

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Inferring global topology from local juxtaposition geometry: interlinking polymer rings and ramifications for topoisomerase action

28 July 2018

1 reference

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Tracking topoisomerase activity at the single-molecule level

28 July 2018

1 reference

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Topoisomerase IV bends and overtwists DNA upon binding

28 July 2018

1 reference

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Analysis of scanning force microscopy images of protein-induced DNA bending using simulations

28 July 2018

1 reference

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DNA bending and unbending by MutS govern mismatch recognition and specificity

28 July 2018

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Analysis of the intrinsic bend in the M13 origin of replication by atomic force microscopy

28 July 2018

1 reference

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Structure of the topoisomerase VI-B subunit: implications for type II topoisomerase mechanism and evolution

28 July 2018

1 reference

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DNA topoisomerases: structure, function, and mechanism

28 July 2018

1 reference

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Mechanism of topology simplification by type II DNA topoisomerases

28 July 2018

1 reference

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Wrapping of DNA around the E.coli RNA polymerase open promoter complex

28 July 2018

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DNA bending by EcoRI DNA methyltransferase accelerates base flipping but compromises specificity

28 July 2018

1 reference

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Simplification of DNA topology below equilibrium values by type II topoisomerases

28 July 2018

1 reference

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Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis.

28 July 2018

1 reference

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Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope

28 July 2018

1 reference

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Evidence of DNA bending in transcription complexes imaged by scanning force microscopy

28 July 2018

1 reference

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Conformational analysis of a 139 base-pair DNA fragment containing a single-stranded break and its interaction with human poly(ADP-ribose) polymerase

28 July 2018

1 reference

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Entropic elasticity of lambda-phage DNA

28 July 2018

1 reference

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Increased production of a knotted form of plasmid pBR322 DNA in Escherichia coli DNA topoisomerase mutants

28 July 2018

1 reference

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Gyrase inhibitors increase the content of knotted DNA species of plasmid pBR322 in Escherichia coli

28 July 2018

1 reference

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Action at hooked or twisted-hooked DNA juxtapositions rationalizes unlinking preference of type-2 topoisomerases.

28 July 2018

1 reference

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DNA deformations near charged surfaces: electron and atomic force microscopy views.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Coordinating the two protomer active sites of human topoisomerase IIalpha: nicks as topoisomerase II poisons

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Expression and purification of soluble His(6)-tagged TEV protease

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Hin-mediated DNA knotting and recombining promote replicon dysfunction and mutation

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

WSXM: a software for scanning probe microscopy and a tool for nanotechnology.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Origin and evolution of DNA topoisomerases

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Human topoisomerase IIalpha rapidly relaxes positively supercoiled DNA: implications for enzyme action ahead of replication forks

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

The structural basis for substrate specificity in DNA topoisomerase IV.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

DNA disentangling by type-2 topoisomerases.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Cellular roles of dna topoisomerases: a molecular perspective

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

DNA topoisomerase VI generates ATP-dependent double-strand breaks with two-nucleotide overhangs

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Type II DNA topoisomerases

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Mechanism of quinolone action. A drug-induced structural perturbation of the DNA precedes strand cleavage by topoisomerase IV.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

DNA bending by Cro protein in specific and nonspecific complexes: implications for protein site recognition and specificity

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

A yeast type II topoisomerase selected for resistance to quinolones. Mutation of histidine 1012 to tyrosine confers resistance to nonintercalative drugs but hypersensitivity to ellipticine.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3141238

Spontaneous DNA lesions poison human topoisomerase IIalpha and stimulate cleavage proximal to leukemic 11q23 chromosomal breakpoints

16 November 2018

1 reference

12 December 2020

Asymmetric removal of supercoils suggests how topoisomerase II simplifies DNA topology

1 reference

12 December 2020

Topological information embodied in local juxtaposition geometry provides a statistical mechanical basis for unknotting by type-2 DNA topoisomerases

1 reference

12 December 2020

Kinetic proofreading can explain the supression of supercoiling of circular DNA molecules by type-II topoisomerases

1 reference

12 December 2020

Computational analysis of the chiral action of type II DNA topoisomerases

1 reference

12 December 2020

DNA bending due to specific p53 and p53 core domain-DNA interactions visualized by electron microscopy

1 reference

12 December 2020

A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKR109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21421557%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21421557%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

PubMed publication ID

21421557

1 reference