(Q27680202)

1

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Brigitte K Ziervogel

2

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Lydia Blachowicz

3

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Benoît Roux

Journal of the American Chemical Society

4

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language of work or name

English

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publication date

6 November 2013

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published in

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volume

135

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issue

44

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page(s)

16561-8

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cites work

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Structure of Escherichia coli OmpF porin from lipidic mesophase

20 March 2017

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PHENIX: a comprehensive Python-based system for macromolecular structure solution

20 March 2017

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Cation-selective Pathway of OmpF Porin Revealed by Anomalous X-ray Diffraction

20 March 2017

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The structure of OmpF porin in a tetragonal crystal form

20 March 2017

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Crystal structures explain functional properties of two E. coli porins

20 March 2017

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Overview of the CCP4 suite and current developments

20 March 2017

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Phasercrystallographic software

20 March 2017

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Scalable molecular dynamics with NAMD

20 March 2017

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Coot: model-building tools for molecular graphics

20 March 2017

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Refinement of macromolecular structures by the maximum-likelihood method

20 March 2017

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VMD: visual molecular dynamics

20 March 2017

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Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types

20 March 2017

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Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard

7 April 2017

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Molecular basis of bacterial outer membrane permeability revisited

7 April 2017

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A robust bulk-solvent correction and anisotropic scaling procedure

7 April 2017

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Molecular dynamics simulations of membrane proteins under asymmetric ionic concentrations

24 May 2017

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Fast Analysis of Molecular Dynamics Trajectories with Graphics Processing Units-Radial Distribution Function Histogramming

29 September 2017

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Insights on the permeability of wide protein channels: measurement and interpretation of ion selectivity

29 September 2017

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Ion selectivity of a biological channel at high concentration ratio: insights on small ion diffusion and binding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Understanding ion channel selectivity and gating and their role in cellular signalling.

29 September 2017

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Crystal structure of osmoporin OmpC from E. coli at 2.0 A.

29 September 2017

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The influence of amino acid protonation states on molecular dynamics simulations of the bacterial porin OmpF.

29 September 2017

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Imaging alpha-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Permeation properties of an engineered bacterial OmpF porin containing the EEEE-locus of Ca2+ channels

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Salting out the ionic selectivity of a wide channel: the asymmetry of OmpF

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Residue ionization and ion transport through OmpF channels

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

KcsA: it's a potassium channel

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Transport across the bacterial outer membrane

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Ion selectivity of gram-negative bacterial porins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Biophysics of the structure and function of porins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Outer membrane as a diffusion barrier in Salmonella typhimurium. Penetration of oligo- and polysaccharides into isolated outer membrane vesicles and cells with degraded peptidoglycan layer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Outer membrane of gram-negative bacteria. XII. Molecular-sieving function of cell wall

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Pleiotropic transport mutants of Escherichia coli lack porin, a major outer membrane protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Understanding ion conductance on a molecular level: an all-atom modeling of the bacterial porin OmpF.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Chemical modification of the bacterial porin OmpF: gain of selectivity by volume reduction

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Molecular modeling: an experimental tool

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Characterisation of channels induced in planar bilayer membranes by detergent solubilised Escherichia coli porins.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Outer membrane of Salmonella. Isolation of protein complex that produces transmembrane channels.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Critical assessment of OmpF channel selectivity: merging information from different experimental protocols.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Electrostatic properties and macroscopic electrodiffusion in OmpF porin and mutants.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Molecular origin of the cation selectivity in OmpF porin: single channel conductances vs. free energy calculation

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Physical descriptions of experimental selectivity measurements in ion channels.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Brownian dynamics simulation of ion flow through porin channels.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

Coupling site-directed mutagenesis with high-level expression: large scale production of mutant porins from E. coli.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3868647

CHARMM-GUI: a web-based graphical user interface for CHARMM

27 November 2018

1 reference

12 December 2020

Overcharging below the nanoscale: multivalent cations reverse the ion selectivity of a biological channel

1 reference

12 December 2020

Processing of X-ray diffraction data collected in oscillation mode

1 reference

12 December 2020

Identification of the outer membrane protein of E. coli that produces transmembrane channels in reconstituted vesicle membranes

1 reference

12 December 2020

Purification and characterization of monomeric Escherichia coli vitamin B12 receptor with high affinity for colicin E3

1 reference

12 December 2020