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Splicing proofreading at 5' splice sites by ATPase Prp28p
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scholarly article
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PubMed
PubMed ID
23462954
retrieved
1 December 2016
title
Splicing proofreading at 5' splice sites by ATPase Prp28p
(English)
1 reference
stated in
PubMed
PubMed ID
23462954
retrieved
1 December 2016
main subject
MRNA splicing protein PRP28 YDR243C
1 reference
stated in
GOA release 2020-03-11
author
Fei Yang
object named as
Fei Yang
series ordinal
1
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author name string
Xiu-Ye Wang
series ordinal
2
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Zhi-Min Zhang
series ordinal
3
0 references
Jia Pu
series ordinal
4
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Yu-Jie Fan
series ordinal
5
0 references
Jiahai Zhou
series ordinal
6
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Charles C Query
series ordinal
7
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Yong-Zhen Xu
series ordinal
8
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language of work or name
English
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publication date
April 2013
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published in
Nucleic Acids Research
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stated in
PubMed
PubMed ID
23462954
retrieved
1 December 2016
volume
41
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page(s)
4660-70
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issue
8
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copyright license
Creative Commons Attribution-NonCommercial 3.0 Unported
start time
7 November 2016
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April 2022 Public Data File from Crossref
copyright status
copyrighted
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cites work
CEF1/CDC5 alleles modulate transitions between catalytic conformations of the spliceosome
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PubMed Central
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Flexibility between the protease and helicase domains of the dengue virus NS3 protein conferred by the linker region and its functional implications
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20 March 2017
A targeted bypass screen identifies Ynl187p, Prp42p, Snu71p, and Cbp80p for stable U1 snRNP/Pre-mRNA interaction
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PubMed Central
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20 March 2017
Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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20 March 2017
The U1 snRNP protein U1C recognizes the 5' splice site in the absence of base pairing
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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20 March 2017
Mechanical devices of the spliceosome: motors, clocks, springs, and things
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PubMed Central
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20 March 2017
The human U5 snRNP-specific 100-kD protein is an RS domain-containing, putative RNA helicase with significant homology to the yeast splicing factor Prp28p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
20 March 2017
PRP28, a 'DEAD-box' protein, is required for the first step of mRNA splicing in vitro
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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20 March 2017
A cold-sensitive mRNA splicing mutant is a member of the RNA helicase gene family
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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20 March 2017
Isolation and characterization of the gene encoding yeast debranching enzyme
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
20 March 2017
PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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20 March 2017
The spliceosome: design principles of a dynamic RNP machine
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
20 March 2017
The 100-kda U5 snRNP protein (hPrp28p) contacts the 5' splice site through its ATPase site
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
20 March 2017
Spliceosome Structure and Function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
7 April 2017
DExD/H box RNA helicases: from generic motors to specific dissociation functions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
7 April 2017
Brr2p-mediated conformational rearrangements in the spliceosome during activation and substrate repositioning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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29 September 2017
Staying on message: ensuring fidelity in pre-mRNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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29 September 2017
The spliceosome: a flexible, reversible macromolecular machine
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
Proofreading and spellchecking: a two-tier strategy for pre-mRNA splicing quality control
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
The DEAH box ATPases Prp16 and Prp43 cooperate to proofread 5' splice site cleavage during pre-mRNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
Brr2p RNA helicase with a split personality: insights into structure and function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
Spliceosome discards intermediates via the DEAH box ATPase Prp43p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C terminus of Prp8.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
"Nought may endure but mutability": spliceosome dynamics and the regulation of splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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29 September 2017
Random mutagenesis by PCR.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
Exon ligation is proofread by the DExD/H-box ATPase Prp22p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
A new twist on RNA helicases: DExH/D box proteins as RNPases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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29 September 2017
Functional interactions of Prp8 with both splice sites at the spliceosomal catalytic center
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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29 September 2017
Flipping the switch to an active spliceosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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29 September 2017
Site-specific crosslinks of yeast U6 snRNA to the pre-mRNA near the 5' splice site.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
Mutational analysis of pre-mRNA splicing in Saccharomyces cerevisiae using a sensitive new reporter gene, CUP1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
Splicing function of mammalian U6 small nuclear RNA: conserved positions in central domain and helix I are essential during the first and second step of pre-mRNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
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29 September 2017
Beat the clock: paradigms for NTPases in the maintenance of biological fidelity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
Multiple roles for U6 snRNA in the splicing pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
A putative ATP binding protein influences the fidelity of branchpoint recognition in yeast splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
29 September 2017
The Prp8 RNase H-like domain inhibits Brr2-mediated U4/U6 snRNA unwinding by blocking Brr2 loading onto the U4 snRNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
2 June 2018
Metal binding and substrate positioning by evolutionarily invariant U6 sequences in catalytically active protein-free snRNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
2 June 2018
An RNA switch at the 5' splice site requires ATP and the DEAD box protein Prp28p
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
2 June 2018
Mutational analysis of U1 function in Schizosaccharomyces pombe: pre-mRNAs differ in the extent and nature of their requirements for this snRNA in vivo.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
2 June 2018
hnRNP A1 proofreads 3' splice site recognition by U2AF.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
27 November 2018
Phosphorylation of human PRP28 by SRPK2 is required for integration of the U4/U6-U5 tri-snRNP into the spliceosome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
27 November 2018
Competition between the ATPase Prp5 and branch region-U2 snRNA pairing modulates the fidelity of spliceosome assembly
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
27 November 2018
Opposing classes of prp8 alleles modulate the transition between the catalytic steps of pre-mRNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
27 November 2018
Intron Removal Requires Proofreading of U2AF/3' Splice Site Recognition by DEK
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
27 November 2018
Repositioning of the reaction intermediate within the catalytic center of the spliceosome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
27 November 2018
Suppression of multiple substrate mutations by spliceosomal prp8 alleles suggests functional correlations with ribosomal ambiguity mutants.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
27 November 2018
A mechanism to enhance mRNA splicing fidelity: the RNA-dependent ATPase Prp16 governs usage of a discard pathway for aberrant lariat intermediates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134
retrieved
27 November 2018
Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23462954
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Mutational analysis of the interactions between U1 small nuclear RNA and pre-mRNA of yeast
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/23462954
retrieved
12 December 2020
based on heuristic
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Identifiers
DOI
10.1093/NAR/GKT149
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
253781
Fatcat ID
release_kjdmatjfwrabbi7n3xbnvxbcui
1 reference
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Fatcat
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https://api.fatcat.wiki/v0/release/kjdmatjfwrabbi7n3xbnvxbcui
retrieved
24 November 2022
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mapped directly with Wikidata item
OpenCitations bibliographic resource ID
253781
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
253781
PMCID
3632134
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
253781
PubMed ID
23462954
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
253781
ResearchGate publication ID
235797020
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