(Q27936858)

1 December 2016

title

Splicing proofreading at 5' splice sites by ATPase Prp28p (English)

1 reference

MRNA splicing protein PRP28 YDR243C

1 December 2016

main subject

1 reference

GOA release 2020-03-11

Fei Yang

1

0 references

author name string

Xiu-Ye Wang

2

0 references

Zhi-Min Zhang

3

0 references

Jia Pu

4

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Yu-Jie Fan

5

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Jiahai Zhou

6

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Charles C Query

7

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Yong-Zhen Xu

8

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language of work or name

English

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publication date

April 2013

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published in

Nucleic Acids Research

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

1 December 2016

volume

41

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issue

8

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page(s)

4660-70

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copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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20 March 2017

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Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA

20 March 2017

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The U1 snRNP protein U1C recognizes the 5' splice site in the absence of base pairing

20 March 2017

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Mechanical devices of the spliceosome: motors, clocks, springs, and things

20 March 2017

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The human U5 snRNP-specific 100-kD protein is an RS domain-containing, putative RNA helicase with significant homology to the yeast splicing factor Prp28p

20 March 2017

1 reference

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PRP28, a 'DEAD-box' protein, is required for the first step of mRNA splicing in vitro

20 March 2017

1 reference

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A cold-sensitive mRNA splicing mutant is a member of the RNA helicase gene family

20 March 2017

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Isolation and characterization of the gene encoding yeast debranching enzyme

20 March 2017

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PRP16 is an RNA-dependent ATPase that interacts transiently with the spliceosome

20 March 2017

1 reference

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The spliceosome: design principles of a dynamic RNP machine

20 March 2017

1 reference

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The 100-kda U5 snRNP protein (hPrp28p) contacts the 5' splice site through its ATPase site

20 March 2017

1 reference

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Spliceosome Structure and Function

20 March 2017

1 reference

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DExD/H box RNA helicases: from generic motors to specific dissociation functions

7 April 2017

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Brr2p-mediated conformational rearrangements in the spliceosome during activation and substrate repositioning

7 April 2017

1 reference

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Staying on message: ensuring fidelity in pre-mRNA splicing

29 September 2017

1 reference

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The spliceosome: a flexible, reversible macromolecular machine

29 September 2017

1 reference

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Proofreading and spellchecking: a two-tier strategy for pre-mRNA splicing quality control

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

DEAH-box ATPase Prp16 has dual roles in remodeling of the spliceosome in catalytic steps

29 September 2017

1 reference

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The DEAH box ATPases Prp16 and Prp43 cooperate to proofread 5' splice site cleavage during pre-mRNA splicing

29 September 2017

1 reference

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Brr2p RNA helicase with a split personality: insights into structure and function

29 September 2017

1 reference

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Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Spliceosome discards intermediates via the DEAH box ATPase Prp43p

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C terminus of Prp8.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

"Nought may endure but mutability": spliceosome dynamics and the regulation of splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Random mutagenesis by PCR.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Exon ligation is proofread by the DExD/H-box ATPase Prp22p

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

The Q motif: a newly identified motif in DEAD box helicases may regulate ATP binding and hydrolysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

A new twist on RNA helicases: DExH/D box proteins as RNPases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Functional interactions of Prp8 with both splice sites at the spliceosomal catalytic center

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Flipping the switch to an active spliceosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Site-specific crosslinks of yeast U6 snRNA to the pre-mRNA near the 5' splice site.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Mutational analysis of pre-mRNA splicing in Saccharomyces cerevisiae using a sensitive new reporter gene, CUP1

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Splicing function of mammalian U6 small nuclear RNA: conserved positions in central domain and helix I are essential during the first and second step of pre-mRNA splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Beat the clock: paradigms for NTPases in the maintenance of biological fidelity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Multiple roles for U6 snRNA in the splicing pathway

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

A putative ATP binding protein influences the fidelity of branchpoint recognition in yeast splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

The Prp8 RNase H-like domain inhibits Brr2-mediated U4/U6 snRNA unwinding by blocking Brr2 loading onto the U4 snRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Metal binding and substrate positioning by evolutionarily invariant U6 sequences in catalytically active protein-free snRNAs

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

An RNA switch at the 5' splice site requires ATP and the DEAD box protein Prp28p

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Mutational analysis of U1 function in Schizosaccharomyces pombe: pre-mRNAs differ in the extent and nature of their requirements for this snRNA in vivo.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

hnRNP A1 proofreads 3' splice site recognition by U2AF.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Phosphorylation of human PRP28 by SRPK2 is required for integration of the U4/U6-U5 tri-snRNP into the spliceosome

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Competition between the ATPase Prp5 and branch region-U2 snRNA pairing modulates the fidelity of spliceosome assembly

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Opposing classes of prp8 alleles modulate the transition between the catalytic steps of pre-mRNA splicing

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Intron Removal Requires Proofreading of U2AF/3' Splice Site Recognition by DEK

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Repositioning of the reaction intermediate within the catalytic center of the spliceosome.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Suppression of multiple substrate mutations by spliceosomal prp8 alleles suggests functional correlations with ribosomal ambiguity mutants

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

A mechanism to enhance mRNA splicing fidelity: the RNA-dependent ATPase Prp16 governs usage of a discard pathway for aberrant lariat intermediates

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3632134

Specific alterations of U1-C protein or U1 small nuclear RNA can eliminate the requirement of Prp28p, an essential DEAD box splicing factor

27 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/23462954

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mutational analysis of the interactions between U1 small nuclear RNA and pre-mRNA of yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/23462954

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT149

1 reference

release_kjdmatjfwrabbi7n3xbnvxbcui

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/kjdmatjfwrabbi7n3xbnvxbcui

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

1 reference

1 reference