Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q28078834)
Watch
English
Single-cell gene expression profiling and cell state dynamics: collecting data, correlating data points and connecting the dots
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
PubMed
review article
1 reference
stated in
Europe PubMed Central
title
Single-cell gene expression profiling and cell state dynamics: collecting data, correlating data points and connecting the dots
(English)
1 reference
stated in
PubMed
main subject
RNA sequencing
0 references
author name string
Carsten Marr
series ordinal
1
1 reference
stated in
Crossref
Joseph X Zhou
series ordinal
2
1 reference
stated in
Crossref
Sui Huang
series ordinal
3
1 reference
stated in
Crossref
language of work or name
English
1 reference
stated in
PubMed
publication date
June 2016
1 reference
stated in
PubMed
published in
Current Opinion in Biotechnology
1 reference
stated in
PubMed
volume
39
1 reference
stated in
PubMed
page(s)
207-14
1 reference
stated in
PubMed
cites work
Defining cell types and states with single-cell genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
20 March 2017
Multiple cell and population-level interactions with mouse embryonic stem cell heterogeneity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
20 March 2017
Single-cell RNA-seq: advances and future challenges
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
20 March 2017
Non-Darwinian dynamics in therapy-induced cancer drug resistance
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
20 March 2017
Dynamics extracted from fixed cells reveal feedback linking cell growth to cell cycle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
20 March 2017
Fractional proliferation: a method to deconvolve cell population dynamics from single-cell data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
20 March 2017
Data reduction for spectral clustering to analyze high throughput flow cytometry data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
20 March 2017
Metabolic stability and epigenesis in randomly constructed genetic nets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
20 March 2017
Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
7 April 2017
Nanog safeguards pluripotency and mediates germline development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
7 April 2017
Localization of ASH1 mRNA particles in living yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
7 April 2017
destiny: diffusion maps for large-scale single-cell data in R.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Oscope identifies oscillatory genes in unsynchronized single-cell RNA-seq experiments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Single-cell messenger RNA sequencing reveals rare intestinal cell types
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Single-cell chromatin accessibility reveals principles of regulatory variation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Diffusion maps for high-dimensional single-cell analysis of differentiation data.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Early reprogramming regulators identified by prospective isolation and mass cytometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
A continuous molecular roadmap to iPSC reprogramming through progression analysis of single-cell mass cytometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Decoding the regulatory network of early blood development from single-cell gene expression measurements.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Computational and analytical challenges in single-cell transcriptomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Computational and experimental single cell biology techniques for the definition of cell type heterogeneity, interplay and intracellular dynamics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Stochastic promoter activation affects Nanog expression variability in mouse embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Systems biology. Conditional density-based analysis of T cell signaling in single-cell data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Single-cell technologies sharpen up mammalian stem cell research
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Dynamic heterogeneity and DNA methylation in embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Automated identification of stratifying signatures in cellular subpopulations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Every cell is special: genome-wide studies add a new dimension to single-cell biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Entering the era of single-cell transcriptomics in biology and medicine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Quantitative single-cell RNA-seq with unique molecular identifiers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Probing cellular processes by long-term live imaging--historic problems and current solutions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Predicting rates of cell state change caused by stochastic fluctuations using a data-driven landscape model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Cooperativity in cellular biochemical processes: noise-enhanced sensitivity, fluctuating enzyme, bistability with nonlinear feedback, and other mechanisms for sigmoidal responses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Systems biology of stem cells: three useful perspectives to help overcome the paradigm of linear pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Quantifying the Waddington landscape and biological paths for development and differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Predicting pancreas cell fate decisions and reprogramming with a hierarchical multi-attractor model
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
The potential landscape of genetic circuits imposes the arrow of time in stem cell differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Cell lineage determination in state space: a systems view brings flexibility to dogmatic canonical rules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Non-genetic heterogeneity of cells in development: more than just noise
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
29 September 2017
Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
2 June 2018
Deconstructing transcriptional heterogeneity in pluripotent stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
2 June 2018
Unbiased classification of sensory neuron types by large-scale single-cell RNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
2 June 2018
Single-cell in situ RNA profiling by sequential hybridization
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
2 June 2018
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
2 June 2018
A novel approach for resolving differences in single-cell gene expression patterns from zygote to blastocyst
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
2 June 2018
Quasi-potential landscape in complex multi-stable systems
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
2 June 2018
Network plasticity of pluripotency transcription factors in embryonic stem cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
27 November 2018
The molecular and mathematical basis of Waddington's epigenetic landscape: a framework for post-Darwinian biology?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5130334
retrieved
27 November 2018
Cell Fate Decision as High-Dimensional Critical State Transition
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/27152696
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.COPBIO.2016.04.015
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/t42ogiu7v5eq3frrlb7bzi3hka
retrieved
30 July 2022
based on heuristic
mapped directly with Wikidata item
Fatcat ID
release_t42ogiu7v5eq3frrlb7bzi3hka
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/t42ogiu7v5eq3frrlb7bzi3hka
retrieved
30 July 2022
based on heuristic
mapped directly with Wikidata item
PMCID
5130334
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/t42ogiu7v5eq3frrlb7bzi3hka
retrieved
30 July 2022
based on heuristic
mapped directly with Wikidata item
PubMed ID
27152696
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/t42ogiu7v5eq3frrlb7bzi3hka
retrieved
30 July 2022
based on heuristic
mapped directly with Wikidata item
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
