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DNA Methylation within Transcribed Regions
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scholarly article
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PubMed
review article
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Europe PubMed Central
title
DNA Methylation within Transcribed Regions
(English)
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stated in
PubMed
main subject
DNA methylation
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author
Hidetoshi Saze
object named as
Hidetoshi Saze
series ordinal
2
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author name string
Taiko K. To
series ordinal
1
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Crossref
Tetsuji Kakutani
series ordinal
3
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Crossref
language of work or name
English
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PubMed
publication date
August 2015
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PubMed
published in
Plant Physiology
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stated in
PubMed
volume
168
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PubMed
issue
4
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PubMed
page(s)
1219-25
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PubMed
cites work
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CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
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The honey bee epigenomes: differential methylation of brain DNA in queens and workers
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Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome
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Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsis thaliana
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29 September 2017
The PHD-finger module of the Arabidopsis thaliana defense regulator EDM2 can recognize triply modified histone H3 peptides
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29 September 2017
Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization
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29 September 2017
Genomic distribution of H3K9me2 and DNA methylation in a maize genome
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29 September 2017
Impacts of pretranscriptional DNA methylation, transcriptional transcription factor, and posttranscriptional microRNA regulations on protein evolutionary rate
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RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
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29 September 2017
Vernalization treatment induces site-specific DNA hypermethylation at the VERNALIZATION-A1 (VRN-A1) locus in hexaploid winter wheat
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29 September 2017
Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns
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PubMed Central
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29 September 2017
RNA-binding protein regulates plant DNA methylation by controlling mRNA processing at the intronic heterochromatin-containing gene IBM1
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PubMed Central
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29 September 2017
An alternative polyadenylation mechanism coopted to the Arabidopsis RPP7 gene through intronic retrotransposon domestication
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29 September 2017
Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
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PubMed Central
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29 September 2017
Intragenic epigenetic changes modulate NCAM alternative splicing in neuronal differentiation
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29 September 2017
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.
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PubMed Central
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29 September 2017
Transposon variants and their effects on gene expression in Arabidopsis
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PubMed Central
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29 September 2017
Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
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PubMed Central
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29 September 2017
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.
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PubMed Central
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29 September 2017
H2A.Z facilitates access of active and repressive complexes to chromatin in embryonic stem cell self-renewal and differentiation.
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29 September 2017
Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator
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PubMed Central
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29 September 2017
DNA methylation in an intron of the IBM1 histone demethylase gene stabilizes chromatin modification patterns
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PubMed Central
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29 September 2017
Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer
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PubMed Central
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29 September 2017
Replication timing-related and gene body-specific methylation of active human genes.
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29 September 2017
Autocatalytic differentiation of epigenetic modifications within the Arabidopsis genome
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PubMed Central
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29 September 2017
Changes in H2A.Z occupancy and DNA methylation during B-cell lymphomagenesis
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PubMed Central
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29 September 2017
Conservation and divergence of methylation patterning in plants and animals
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Genome-wide evolutionary analysis of eukaryotic DNA methylation.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
The rules of gene expression in plants: organ identity and gene body methylation are key factors for regulation of gene expression in Arabidopsis thaliana
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Two strategies for gene regulation by promoter nucleosomes
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Gene body-specific methylation on the active X chromosome
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis
1 reference
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PubMed Central
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29 September 2017
Five repair pathways in one context: chromatin modification during DNA repair
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PubMed Central
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29 September 2017
Mutagenesis at methylated CpG sequences.
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PubMed Central
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29 September 2017
Patterning chromatin: form and function for H2A.Z variant nucleosomes
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
RNA polymerase I transcription factors in active yeast rRNA gene promoters enhance UV damage formation and inhibit repair
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Arabidopsis MET1 cytosine methyltransferase mutants
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
Plant DNA methyltransferases.
1 reference
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PubMed Central
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29 September 2017
Meiotically and mitotically stable inheritance of DNA hypomethylation induced by ddm1 mutation of Arabidopsis thaliana
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
DNA methylation and the frequency of CpG in animal DNA.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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29 September 2017
SHOOT GROWTH1 maintains Arabidopsis epigenomes by regulating IBM1.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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2 June 2018
Relationship between nucleosome positioning and DNA methylation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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2 June 2018
Multiple effects govern endogenous retrovirus survival patterns in human gene introns
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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2 June 2018
Mechanism for full-length RNA processing of Arabidopsis genes containing intragenic heterochromatin
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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27 November 2018
The evolution of invertebrate gene body methylation
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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27 November 2018
Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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27 November 2018
Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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27 November 2018
Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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27 November 2018
The SRA methyl-cytosine-binding domain links DNA and histone methylation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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27 November 2018
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528756
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27 November 2018
Maintenance of CpG methylation is essential for epigenetic inheritance during plant gametogenesis
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/26143255
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The essential histone variant H2A.Z regulates the equilibrium between different chromatin conformational states
1 reference
stated in
PubMed
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https://pubmed.ncbi.nlm.nih.gov/26143255
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
What triggers differential DNA methylation of genes and TEs: contribution of body methylation?
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26143255
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Arabidopsis thaliana DNA methylation mutants
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26143255
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1104/PP.15.00543
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PMC publication ID
4528756
1 reference
stated in
PubMed
PubMed publication ID
26143255
1 reference
stated in
PubMed
ResearchGate publication ID
280030069
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