(Q28257664)

1

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Kathi Zarnack

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Nicholas M Luscombe

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Jernej Ule

From birth to death: the complex lives of eukaryotic mRNAs

4

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language of work or name

English

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publication date

18 January 2012

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published in

Nature Reviews Genetics

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volume

13

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page(s)

77-83

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issue

2

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cites work

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Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

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Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

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The multifunctional RNA-binding protein hnRNP A1 is required for processing of miR-18a

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The fungal RNA-binding protein Rrm4 mediates long-distance transport of ubi1 and rho3 mRNAs.

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HITS-CLIP yields genome-wide insights into brain alternative RNA processing

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An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells

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Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

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Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans

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Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.

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Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast

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iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

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A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

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Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data

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A two-tracked approach to analyze RNA-protein crosslinking sites in native, nonlabeled small nuclear ribonucleoprotein particles

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Counting absolute numbers of molecules using unique molecular identifiers

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RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries

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Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

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Mammalian microRNAs predominantly act to decrease target mRNA levels

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Defining mechanisms that regulate RNA polymerase II transcription in vivo

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Nascent transcript sequencing visualizes transcription at nucleotide resolution

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TopHat: discovering splice junctions with RNA-Seq

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Fast mapping of short sequences with mismatches, insertions and deletions using index structures

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Fast and SNP-tolerant detection of complex variants and splicing in short reads

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CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins

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