(Q28603548)

Majed A Alzahrani

12

0 references

Loqmane Seridi

Loqmane Seridi

2

0 references

Yanal Ghosheh

Yanal Ghosheh

14

0 references

Yi Jin Liew

Yi Jin Liew

5

0 references

Celia Schunter

Celia Schunter

15

0 references

Feras F Lafi

Feras F Lafi

9

0 references

Sebastian Baumgarten

Sebastian Baumgarten

16

0 references

Manuel Aranda

Manuel Aranda

19

0 references

Timothy Ravasi

Timothy Ravasi

24

0 references

Ute Hentschel

Ute Hentschel

23

0 references

Xin Gao

Xin Gao

18

0 references

Christian R. Voolstra

Christian R Voolstra

22

0 references

Michael L. Berumen

Michael L Berumen

17

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author name string

Taewoo Ryu

1

0 references

Lucas Moitinho-Silva

3

0 references

Matthew Oates

4

0 references

Charalampos Mavromatis

6

0 references

Xiaolei Wang

7

0 references

Annika Haywood

8

0 references

Marija Kupresanin

10

0 references

Rachid Sougrat

11

0 references

Emily Giles

13

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Sylvain Foret

https://scigraph.springernature.com/pub.10.1186/s12864-016-2501-0

20

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language of work or name

English

0 references

publication date

29 February 2016

0 references

published in

BMC Genomics

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volume

17

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issue

1

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page(s)

158

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exact match

0 references

cites work

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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A complex journey: transmission of microbial symbionts

17 March 2017

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17 March 2017

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The Sequence Alignment/Map format and SAMtools

17 March 2017

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Fast and accurate short read alignment with Burrows-Wheeler transform

17 March 2017

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17 March 2017

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Extensive characterization of IFN-induced GTPases mGBP1 to mGBP10 involved in host defense

17 March 2017

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Sponge-associated microorganisms: evolution, ecology, and biotechnological potential

17 March 2017

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AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints

17 March 2017

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Gene finding in novel genomes

17 March 2017

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

17 March 2017

1 reference

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An efficient algorithm for large-scale detection of protein families

17 March 2017

1 reference

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Gene ontology: tool for the unification of biology

17 March 2017

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Basic local alignment search tool

17 March 2017

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BEDTools: a flexible suite of utilities for comparing genomic features

17 March 2017

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ABySS: a parallel assembler for short read sequence data

7 April 2017

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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

7 April 2017

1 reference

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DAMPs, PAMPs and alarmins: all we need to know about danger

7 April 2017

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Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

7 April 2017

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CD-HIT: accelerated for clustering the next-generation sequencing data

7 April 2017

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The HMA-LMA dichotomy revisited: an electron microscopical survey of 56 sponge species.

7 April 2017

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Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics

29 September 2017

1 reference

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The analysis of eight transcriptomes from all poriferan classes reveals surprising genetic complexity in sponges

29 September 2017

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Extensive differences in gene expression between symbiotic and aposymbiotic cnidarians

29 September 2017

1 reference

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The characterization of sponge NLRs provides insight into the origin and evolution of this innate immune gene family in animals

29 September 2017

1 reference

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L_RNA_scaffolder: scaffolding genomes with transcripts.

29 September 2017

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Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea.

29 September 2017

1 reference

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Optimizing de novo assembly of short-read RNA-seq data for phylogenomics

29 September 2017

1 reference

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Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium

29 September 2017

1 reference

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DcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Genomic insights into the marine sponge microbiome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

A beginner's guide to eukaryotic genome annotation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Metaorganisms as the new frontier

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

New paradigms for the evolution of beneficial infections

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

De novo assembly and analysis of RNA-seq data.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Evolutionary microbial genomics: insights into bacterial host adaptation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

The alarmin functions of high-mobility group proteins.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Microbial co-habitation and lateral gene transfer: what transposases can tell us.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

High-mobility group box protein 1 (HMGB1): an alarmin mediating the pathogenesis of rheumatic disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

The innate immune repertoire in cnidaria--ancestral complexity and stochastic gene loss.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Neural recognition molecules of the immunoglobulin superfamily: signaling transducers of axon guidance and neuronal migration

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

The PIN-domain toxin-antitoxin array in mycobacteria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Innate immune defense of the sponge Suberites domuncula against bacteria involves a MyD88-dependent signaling pathway. Induction of a perforin-like molecule

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

An extracellular beta-propeller module predicted in lipoprotein and scavenger receptors, tyrosine kinases, epidermal growth factor precursor, and extracellular matrix components

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Evolution of the major pilus gene cluster of Haemophilus influenzae.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Precambrian Sponges with Cellular Structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Extracellular release of bactericidal/permeability-increasing protein in newborn infants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4772301

Compagen, a comparative genomics platform for early branching metazoan animals, reveals early origins of genes regulating stem-cell differentiation

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-2501-0

Differential gene expression in a marine sponge in relation to its symbiotic state

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-2501-0

Impaired innate immunity in the newborn: newborn neutrophils are deficient in bactericidal/permeability-increasing protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-2501-0

Functional analysis of nodulin 26, an aquaporin in soybean root nodule symbiosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-2501-0

Symbiotic interaction between dinoflagellates and the demosponge Lubomirskia baicalensis: aquaporin-mediated glycerol transport

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12864-016-2501-0

Symbiotic competence in Lotus japonicus is affected by plant nitrogen status: transcriptomic identification of genes affected by a new signalling pathway

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26926518

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S12864-016-2501-0

1 reference

Dimensions Publication ID

2622789

1028101589

0 references

2622789

1 reference

1 reference

1 reference