(Q28703894)

1

Alana Alexander

0 references

Scott Baker

8

C Scott Baker

0 references

Colm Carraher

Colm Carraher

5

0 references

Richard Cronn

Richard Cronn

7

0 references

author name string

Debbie Steel

2

0 references

Kendra Hoekzema

4

0 references

Matthew Parks

Genome Biology and Evolution

6

0 references

language of work or name

English

0 references

publication date

2013

0 references

published in

0 references

volume

5

0 references

issue

1

0 references

page(s)

113-29

0 references

describes a project that uses

massive parallel sequencing

1 reference

Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation

inferred from title

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Radiation of extant cetaceans driven by restructuring of the oceans

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

The Sequence Alignment/Map format and SAMtools

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Fast and accurate short read alignment with Burrows-Wheeler transform

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Mapping short DNA sequencing reads and calling variants using mapping quality scores

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

The effect of inappropriate calibration: three case studies in molecular ecology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Strong purifying selection in transmission of mammalian mitochondrial DNA

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

BEAST: Bayesian evolutionary analysis by sampling trees

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

DNA evidence for historic population size and past ecosystem impacts of gray whales

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Relaxed phylogenetics and dating with confidence

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Habitat structure and the dispersal of male and female bottlenose dolphins (Tursiops truncatus)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Bayesian coalescent inference of past population dynamics from molecular sequences

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Low worldwide genetic diversity in the killer whale (Orcinus orca): implications for demographic history

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Optimality of the genetic code with respect to protein stability and amino-acid frequencies

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Body size, metabolic rate, generation time, and the molecular clock

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Abundant mitochondrial DNA variation and world-wide population structure in humpback whales

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Next-generation sequencing of human mitochondrial reference genomes uncovers high heteroplasmy frequency

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Common misconceptions in molecular ecology: echoes of the modern synthesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Circumpolar diversity and geographic differentiation of mtDNA in the critically endangered Antarctic blue whale (Balaenoptera musculus intermedia).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Dynamics of mitochondrial heteroplasmy in three families investigated via a repeatable re-sequencing study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Multiplexed microsatellite recovery using massively parallel sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

High-throughput DNA sequencing--concepts and limitations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

A SNP discovery method to assess variant allele probability from next-generation resequencing data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Population structure of humpback whales from their breeding grounds in the South Atlantic and Indian Oceans

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Radiation and speciation of pelagic organisms during periods of global warming: the case of the common minke whale, Balaenoptera acutorostrata

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Evidence for male dispersal along the coasts but no migration in pelagic waters in dusky dolphins (Lagenorhynchus obscurus).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Mitogenomic analyses provide new insights into cetacean origin and evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

NUMTs in sequenced eukaryotic genomes.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Unreliable mtDNA data due to nuclear insertions: a cautionary tale from analysis of humans and other great apes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

The mitochondrial genome: mutation, selection and recombination.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Historical population size change of bowhead whales inferred from DNA sequence polymorphism data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

The power of relative rates tests depends on the data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Population genetic structure of North Atlantic, Mediterranean Sea and Sea of Cortez fin whales, Balaenoptera physalus (Linnaeus 1758): analysis of mitochondrial and nuclear loci

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

The physiological basis of diving to depth: birds and mammals

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Patterns of kinship in groups of free-living sperm whales (Physeter macrocephalus) revealed by multiple molecular genetic analyses

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Hierarchical structure of mitochondrial DNA gene flow among humpback whales Megaptera novaeangliae, world-wide.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Evolution of the cetacean mitochondrial D-loop region

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

The mitochondrial genome of the sperm whale and a new molecular reference for estimating eutherian divergence dates

3 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Population structure of nuclear and mitochondrial DNA variation among humpback whales in the North Pacific

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

GENETIC VARIATION OF KOGIA SPP. WITH PRELIMINARY EVIDENCE FOR TWO SPECIES OF KOGIA SIMA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Genetic variation and evidence for population structure in eastern North Pacific false killer whales (Pseudorca crassidens)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Relaxed clocks and inferences of heterogeneous patterns of nucleotide substitution and divergence time estimates across whales and dolphins (Mammalia: Cetacea).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Pseudogenes and DNA-based diet analyses: a cautionary tale from a relatively well sampled predator-prey system.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Female philopatry in coastal basins and male dispersion across the North Atlantic in a highly mobile marine species, the sperm whale (Physeter macrocephalus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

TNT, a free program for phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Phylogeography and population structure of the Dall's porpoise, Phocoenoides dalli, in Japanese waters revealed by mitochondrial DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Improved characterisation of among-lineage rate variation in cetacean mitogenomes using codon-partitioned relaxed clocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Big and slow: phylogenetic estimates of molecular evolution in baleen whales (suborder mysticeti).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Quantitative Phyletics and the Evolution of Anurans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Comment on "Population size does not influence mitochondrial genetic diversity in animals".

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Strong variations of mitochondrial mutation rate across mammals--the longevity hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Kinship of long-term associates in the highly social sperm whale.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Understanding patterns of genetic diversity in the oak gallwasp Biorhiza pallida: demographic history or a Wolbachia selective sweep?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Rapid whole-genome mutational profiling using next-generation sequencing technologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Cultural Selection and Genetic Diversity in Matrilineal Whales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Nuclear integrations: challenges for mitochondrial DNA markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Population structure and individual movement of southern right whales around New Zealand and Australia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Can genetic differences explain vocal dialect variation in sperm whales, Physeter macrocephalus?

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3595033

Molecular insight into the population structure of common and spotted dolphins inhabiting the pelagic waters of the Northeast Atlantic

27 November 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVS126

Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny

21 January 2018

1 reference

12 December 2020

The occurrence of mtDNA heteroplasmy in multiple cetacean species

1 reference

12 December 2020

Genetic structure of harbour porpoise Phocoena phocoena populations in the northwest Atlantic based on mitochondrial and nuclear markers

1 reference

12 December 2020

Low diversity and biased substitution patterns in the mitochondrial DNA control region of sperm whales: implications for estimates of time since common ancestry

1 reference

12 December 2020

Model of amino acid substitution in proteins encoded by mitochondrial DNA

1 reference

12 December 2020

Global matrilineal population structure in sperm whales as indicated by mitochondrial DNA sequences

1 reference

12 December 2020

Identifiers

DOI

10.1093/GBE/EVS126

1 reference

542283

542283

1 reference

1 reference

1 reference