(Q29307067)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23279205%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

review article

1 reference

title

Fluxomics - connecting 'omics analysis and phenotypes (English)

1 reference

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21 February 2020

0 references

1

1 reference

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21 February 2020

Jens O Krömer

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23279205%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

author name string

Gal Winter

series ordinal

1

1 reference

9 April 2017

publication date

1 January 2013

2 references

9 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23279205%20AND%20SRC:MED&resulttype=core&format=json

Environmental Microbiology

21 February 2020

published in

2 references

9 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23279205%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

volume

15

2 references

9 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23279205%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

issue

7

2 references

9 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23279205%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

page(s)

1901-1916

2 references

9 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23279205%20AND%20SRC:MED&resulttype=core&format=json

Requirement of ArcA for redox regulation in Escherichia coli under microaerobic but not anaerobic or aerobic conditions

21 February 2020

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Mass spectrometry-based proteomics: existing capabilities and future directions

21 January 2018

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Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

21 January 2018

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Hypoxic fed-batch cultivation of Pichia pastoris increases specific and volumetric productivity of recombinant proteins

21 January 2018

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A multi-level study of recombinant Pichia pastoris in different oxygen conditions.

21 January 2018

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Protein trafficking, ergosterol biosynthesis and membrane physics impact recombinant protein secretion in Pichia pastoris

21 January 2018

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TCA cycle activity in Saccharomyces cerevisiae is a function of the environmentally determined specific growth and glucose uptake rates

21 January 2018

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Redirection of the respiro-fermentative flux distribution in Saccharomyces cerevisiae by overexpression of the transcription factor Hap4p

21 January 2018

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Sampling for metabolome analysis of microorganisms.

21 January 2018

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Sampling the solution space in genome-scale metabolic networks reveals transcriptional regulation in key enzymes

21 January 2018

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Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae

21 January 2018

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Synergy between (13)C-metabolic flux analysis and flux balance analysis for understanding metabolic adaptation to anaerobiosis in E. coli.

21 January 2018

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Observations on the carbohydrate metabolism of tumours

21 January 2018

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Rational design of ¹³C-labeling experiments for metabolic flux analysis in mammalian cells

21 January 2018

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Expression of heterologous proteins in Pichia pastoris: a useful experimental tool in protein engineering and production

21 January 2018

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Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.

21 January 2018

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The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels

21 January 2018

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From fluxes and isotope labeling patterns towards in silico cells

21 January 2018

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CreA influences the metabolic fluxes of Aspergillus nidulans during growth on glucose and xylose

21 January 2018

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The Crabtree Effect: A Regulatory System in Yeast

21 January 2018

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Towards quantitative metabolomics of mammalian cells: development of a metabolite extraction protocol

21 January 2018

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Testing biochemistry revisited: how in vivo metabolism can be understood from in vitro enzyme kinetics

21 January 2018

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Catch me if you can: mass spectrometry-based phosphoproteomics and quantification strategies.

21 January 2018

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A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

21 January 2018

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Transcriptional regulation of respiration in yeast metabolizing differently repressive carbon substrates

21 January 2018

1 reference

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Tradeoff between enzyme and metabolite efficiency maintains metabolic homeostasis upon perturbations in enzyme capacity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Oxygen- and glucose-dependent regulation of central carbon metabolism in Pichia anomala.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Characterization of the metabolic shift between oxidative and fermentative growth in Saccharomyces cerevisiae by comparative 13C flux analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Influence of oxygen on the growth of Saccharomyces cerevisiae in continuous culture

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Quinones as the redox signal for the arc two-component system of bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

21 January 2018

Bacterial redox sensors.

1 reference

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Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes

21 January 2018

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Understanding genetic variation and function- the applications of next generation sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Large-scale 13C-flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

A flux-sensing mechanism could regulate the switch between respiration and fermentation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Oxygen dependence of metabolic fluxes and energy generation of Saccharomyces cerevisiae CEN.PK113-1A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Dynamic flux balance analysis of the metabolism of Saccharomyces cerevisiae during the shift from fully respirative or respirofermentative metabolic states to anaerobiosis

21 January 2018

1 reference

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EcoCyc: a comprehensive database resource for Escherichia coli

21 January 2018

1 reference

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Aspergilli: systems biology and industrial applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Proteome-wide alterations in Escherichia coli translation rates upon anaerobiosis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

In-depth profiling of lysine-producing Corynebacterium glutamicum by combined analysis of the transcriptome, metabolome, and fluxome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Physiological response of Corynebacterium glutamicum to oxidative stress induced by deletion of the transcriptional repressor McbR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

21 January 2018

1 reference

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Simultaneous determination of multiple intracellular metabolites in glycolysis, pentose phosphate pathway and tricarboxylic acid cycle by liquid chromatography-mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Identification of a quinone-sensitive redox switch in the ArcB sensor kinase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Metabolic regulation of Escherichia coli and its phoB and phoR genes knockout mutants under phosphate and nitrogen limitations as well as at acidic condition

21 January 2018

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Application of dynamic flux balance analysis to an industrial Escherichia coli fermentation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Metabolic flux analysis of wild-type Escherichia coli and mutants deficient in pyruvate-dissimilating enzymes during the fermentative metabolism of glucuronate

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Metabolic analysis of wild-type Escherichia coli and a pyruvate dehydrogenase complex (PDHC)-deficient derivative reveals the role of PDHC in the fermentative metabolism of glucose.

21 January 2018

1 reference

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Cyclic AMP-dependent catabolite repression is the dominant control mechanism of metabolic fluxes under glucose limitation in Escherichia coli

21 January 2018

1 reference

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It is all about metabolic fluxes

21 January 2018

1 reference

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Transcriptional control of metabolic fluxes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Metabolic flux analysis of Escherichia coli creB and arcA mutants reveals shared control of carbon catabolism under microaerobic growth conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

The benefits of being transient: isotope-based metabolic flux analysis at the short time scale.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

What is flux balance analysis?

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Escherichia coli transcriptome dynamics during the transition from anaerobic to aerobic conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Transition of Escherichia coli from aerobic to micro-aerobic conditions involves fast and slow reacting regulatory components.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Scheffersomyces stipitis: a comparative systems biology study with the Crabtree positive yeast Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Equations and calculations for fermentations of butyric acid bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Impact of global transcriptional regulation by ArcA, ArcB, Cra, Crp, Cya, Fnr, and Mlc on glucose catabolism in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Do elementary flux modes combine linearly at the "atomic" level?: integrating tracer-based metabolomics data and elementary flux modes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Integrating tracer-based metabolomics data and metabolic fluxes in a linear fashion via Elementary Carbon Modes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Aerobic fermentation of D-glucose by an evolved cytochrome oxidase-deficient Escherichia coli strain

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Deletion of genes encoding cytochrome oxidases and quinol monooxygenase blocks the aerobic-anaerobic shift in Escherichia coli K-12 MG1655.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Genome-scale models of microbial cells: evaluating the consequences of constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

OpenFLUX: efficient modelling software for 13C-based metabolic flux analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Metabolomics in systems microbiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Transcriptional responses of Saccharomyces cerevisiae to shift from respiratory and respirofermentative to fully fermentative metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Metabolic reconstruction, constraint-based analysis and game theory to probe genome-scale metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Toward the single-hour high-quality genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Distinct roles of two anaplerotic pathways in glutamate production induced by biotin limitation in Corynebacterium glutamicum

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Metabolic networks in motion: 13C-based flux analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

The aerobic/anaerobic interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Characterization of the metabolic shift of Saccharomyces bayanus var. uvarum by continuous aerobic culture.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Getting started in gene expression microarray analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Genome‐scale metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

The proteomic future: where mass spectrometry should be taking us.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Metabolic regulation analysis of wild-type and arcA mutant Escherichia coli under nitrate conditions using different levels of omics data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Reprogramming of Escherichia coli K-12 metabolism during the initial phase of transition from an anaerobic to a micro-aerobic environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Next generation sequencing of microbial transcriptomes: challenges and opportunities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

A mutant of Escherichia coli deficient in pyruvate formate lyase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Metabolic flux screening of Saccharomyces cerevisiae single knockout strains on glucose and galactose supports elucidation of gene function

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Effect of iclR and arcA knockouts on biomass formation and metabolic fluxes in Escherichia coli K12 and its implications on understanding the metabolism of Escherichia coli BL21 (DE3).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

13C labeling experiments at metabolic nonstationary conditions: an exploratory study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Central carbon metabolism of Saccharomyces cerevisiae in anaerobic, oxygen-limited and fully aerobic steady-state conditions and following a shift to anaerobic conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

13C metabolic flux analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Impact of the cold shock phenomenon on quantification of intracellular metabolites in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

Quantifying reductive carboxylation flux of glutamine to lipid in a brown adipocyte cell line

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

13C metabolic flux analysis in complex systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

FiatFlux--a software for metabolic flux analysis from 13C-glucose experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12064

21 January 2018

Identifiers

DOI

10.1111/1462-2920.12064

3 references

9 April 2017

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23279205%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

1 reference

Consolidated OpenCitations Corpus – April 2017

2 references

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23279205%20AND%20SRC:MED&resulttype=core&format=json