(Q30275338)

21 February 2018

title

DEEP MOTIF DASHBOARD: VISUALIZING AND UNDERSTANDING GENOMIC SEQUENCES USING DEEP NEURAL NETWORKS. (English)

1 reference

21 February 2018

artificial neural network

main subject

deep neural network

0 references

deep learning

0 references

1 reference

1 reference

Jack Lanchantin

1

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21 February 2018

Ritambhara Singh

series ordinal

2

1 reference

21 February 2018

Beilun Wang

series ordinal

3

1 reference

21 February 2018

Yanjun Qi

series ordinal

4

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21 February 2018

publication date

1 January 2016

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21 February 2018

Pacific Symposium on Biocomputing

published in

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21 February 2018

volume

22

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21 February 2018

page(s)

254-265

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21 February 2018

DeepChrome: deep-learning for predicting gene expression from histone modifications

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks

3 June 2018

1 reference

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DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

Predicting effects of noncoding variants with deep learning-based sequence model

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

On Pixel-Wise Explanations for Non-Linear Classifier Decisions by Layer-Wise Relevance Propagation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

SeqGL Identifies Context-Dependent Binding Signals in Genome-Wide Regulatory Element Maps

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

Enhanced regulatory sequence prediction using gapped k-mer features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

An integrated encyclopedia of DNA elements in the human genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

MEME-ChIP: motif analysis of large DNA datasets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

Quantifying similarity between motifs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

DNA binding sites: representation and discovery

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

3 June 2018

Long short-term memory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

An assessment of neural network and statistical approaches for prediction of E. coli promoter sites

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5787355

10.1142/9789813207813_0025

3 June 2018

Identifiers

DOI

1 reference

21 February 2018

1 reference

1 reference

21 February 2018

PubMed ID

27896980

1 reference

21 February 2018