(Q30365845)

21 June 2017

title

Characterizing of functional human coding RNA editing from evolutionary, structural, and dynamic perspectives. (English)

1 reference

21 June 2017

3

1 reference

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4 June 2020

6

Gideon Rechavi

1 reference

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4 June 2020

4

Ninette Amariglio

1 reference

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4 June 2020

7

Eran Eyal

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4 June 2020

2

Lily Bazak

1 reference

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4 June 2020

author name string

Oz Solomon

series ordinal

1

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4 June 2020

Ron Unger

series ordinal

5

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4 June 2020

language of work or name

English

0 references

publication date

3 September 2014

1 reference

21 June 2017

1 reference

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4 June 2020

volume

82

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4 June 2020

issue

11

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4 June 2020

page(s)

3117-3131

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25136968%20AND%20SRC:MED&resulttype=core&format=json

Identifying RNA editing sites using RNA sequencing data alone

4 June 2020

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Accurate identification of human Alu and non-Alu RNA editing sites

21 January 2018

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Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

21 January 2018

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Accurate identification of A-to-I RNA editing in human by transcriptome sequencing

21 January 2018

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Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing

21 January 2018

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Breaking the central dogma by RNA editing

21 January 2018

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Letter from the editor: Adenosine-to-inosine RNA editing in Alu repeats in the human genome

21 January 2018

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Systematic identification of abundant A-to-I editing sites in the human transcriptome

21 January 2018

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Widespread RNA editing of embedded alu elements in the human transcriptome

21 January 2018

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Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome

21 January 2018

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RNA editing and hypermutation by adenosine deamination

21 January 2018

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RNA editing by adenosine deaminases that act on RNA

21 January 2018

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ADAR gene family and A-to-I RNA editing: diverse roles in posttranscriptional gene regulation

21 January 2018

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Functions and regulation of RNA editing by ADAR deaminases

21 January 2018

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ADAR1 is essential for the maintenance of hematopoiesis and suppression of interferon signaling

21 January 2018

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Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

A-to-I RNA editing and human disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Glutamate receptors: RNA editing and death of motor neurons

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Altered adenosine-to-inosine RNA editing in human cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Adenosine-to-inosine RNA editing meets cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Underediting of glutamate receptor GluR-B mRNA in malignant gliomas

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Deletion of the RNA-editing enzyme ADAR1 causes regression of established chronic myelogenous leukemia in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Recoding RNA editing of AZIN1 predisposes to hepatocellular carcinoma

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Systematic identification of edited microRNAs in the human brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Global regulation of alternative splicing by adenosine deaminase acting on RNA (ADAR).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Intronic Alus influence alternative splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

RNA-editing-mediated exon evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Regulation of alternative splicing by RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

The RISC subunit Tudor-SN binds to hyper-edited double-stranded RNA and promotes its cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Regulating gene expression through RNA nuclear retention

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

RADAR: a rigorously annotated database of A-to-I RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

RNA editing of protein sequences: a rare event in human transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Regulation of glutamate receptor B pre-mRNA splicing by RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Nervous system targets of RNA editing identified by comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

DARNED: a DAtabase of RNa EDiting in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

The UCSC Table Browser data retrieval tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

dbNSFP v2.0: a database of human non-synonymous SNVs and their functional predictions and annotations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Identification of RNA editing sites in the SNP database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Screening of human SNP database identifies recoding sites of A-to-I RNA editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

dbSNP: the NCBI database of genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Prediction of protein secondary structure at better than 70% accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

The DISOPRED server for the prediction of protein disorder

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Reactome: a database of reactions, pathways and biological processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

MINT, the molecular interaction database: 2012 update

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Structure-based prediction of protein–protein interactions on a genome-wide scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

PISCES: recent improvements to a PDB sequence culling server

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

ModBase, a database of annotated comparative protein structure models, and associated resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

The SWISS-MODEL Repository and associated resources

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Inference of macromolecular assemblies from crystalline state

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Importance of solvent accessibility and contact surfaces in modeling side-chain conformations in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Improved prediction of protein side-chain conformations with SCWRL4

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

TM-align: a protein structure alignment algorithm based on the TM-score

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Anisotropic network model: systematic evaluation and a new web interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Efficient identification of critical residues based only on protein structure by network analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

The FoldX web server: an online force field

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Human coding RNA editing is generally nonadaptive

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

PHD: predicting one-dimensional protein structure by profile-based neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Alu exonization events reveal features required for precise recognition of exons by the splicing machinery

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Tissue-specific alternative splicing remodels protein-protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Quantifying the mechanisms of domain gain in animal proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Mammalian conserved ADAR targets comprise only a small fragment of the human editosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Structural features that predict real-value fluctuations of globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

RNA Editing of the Glutamate Receptor Subunits GluR2 and GluR6 in Human Brain Tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

RNA editing of human kainate receptor subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Editing of human K(V)1.1 channel mRNAs disrupts binding of the N-terminus tip at the intracellular cavity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

RNA editing underlies temperature adaptation in K+ channels from polar octopuses

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

KRAB zinc finger protein ZNF382 is a proapoptotic tumor suppressor that represses multiple oncogenes and is commonly silenced in multiple carcinomas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Endoglin promotes transforming growth factor beta-mediated Smad 1/5/8 signaling and inhibits endothelial cell migration through its association with GIPC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Molecular and cellular studies of the human homolog of the 160-kD alpha-subunit of the coatomer protein complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

A molecular timescale for vertebrate evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Research resource: whole transcriptome RNA sequencing detects multiple 1α,25-dihydroxyvitamin D(3)-sensitive metabolic pathways in developing zebrafish

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Cyclin I activates Cdk5 and regulates expression of Bcl-2 and Bcl-XL in postmitotic mouse cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Quantitative analysis of focused a-to-I RNA editing sites by ultra-high-throughput sequencing in psychiatric disorders

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Cyclin I is involved in the regulation of cell cycle progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

MicroRNA-mediated loss of ADAR1 in metastatic melanoma promotes tumor growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

How malaria has affected the human genome and what human genetics can teach us about malaria

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Salmonella typhi uses CFTR to enter intestinal epithelial cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Editing of HIV-1 RNA by the double-stranded RNA deaminase ADAR1 stimulates viral infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

Network Analysis of Protein Structures Identifies Functional Residues

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24672

21 January 2018

Identifiers

DOI

10.1002/PROT.24672

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25136968%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

1 reference