(Q30378664)

21 June 2017

title

Template based protein structure modeling by global optimization in CASP11. (English)

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21 June 2017

9

Juyong Lee

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21 June 2017

Keehyoung Joo

1

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21 June 2017

InSuk Joung

2

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21 June 2017

Sun Young Lee

3

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21 June 2017

Jong Yun Kim

4

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21 June 2017

Qianyi Cheng

5

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21 June 2017

Balachandran Manavalan

6

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21 June 2017

Jong Young Joung

7

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21 June 2017

Seungryong Heo

8

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21 June 2017

Mikyung Nam

10

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21 June 2017

In-Ho Lee

11

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21 June 2017

Sung Jong Lee

12

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21 June 2017

Jooyoung Lee

13

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21 June 2017

language of work or name

English

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publication date

29 August 2015

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21 June 2017

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21 June 2017

volume

84 Suppl 1

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21 June 2017

page(s)

221-232

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High accuracy template based modeling by global optimization

21 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Improving physical realism, stereochemistry, and side-chain accuracy in homology modeling: Four approaches that performed well in CASP8.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Protein structure modeling for CASP10 by multiple layers of global optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Conformational analysis of the 20-residue membrane-bound portion of melittin by conformational space annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Multiple sequence alignment by conformational space annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Protein homology detection by HMM-HMM comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Improved prediction of protein side-chain conformations with SCWRL4

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Assessment of template-based protein structure predictions in CASP10

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Scoring function for automated assessment of protein structure template quality

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Protein secondary structure prediction based on position-specific scoring matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Fold recognition by predicted alignment accuracy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Exhaustive matching of the entire protein sequence database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Amino acid substitution matrices from protein blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Modularity optimization by conformational space annealing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Hidden information revealed by optimal community structure from a protein-complex bipartite network improves protein function prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Comparative protein modelling by satisfaction of spatial restraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

All-atom empirical potential for molecular modeling and dynamics studies of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

De novo protein structure prediction by dynamic fragment assembly and conformational space annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

GOAP: a generalized orientation-dependent, all-atom statistical potential for protein structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

PDP: protein domain parser.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

TM-align: a protein structure alignment algorithm based on the TM-score

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Assessment of CASP7 predictions in the high accuracy template-based modeling category

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

Greedy function approximation: A gradient boosting machine

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24917

21 January 2018

Identifiers

DOI

10.1002/PROT.24917

1 reference

21 June 2017

1 reference