(Q30403052)

21 June 2017

title

De novo protein structure prediction by dynamic fragment assembly and conformational space annealing (English)

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protein structure prediction

21 June 2017

main subject

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5

Chaok Seok

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21 June 2017

1

Juyong Lee

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21 June 2017

Jinhyuk Lee

2

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21 June 2017

Takeshi N Sasaki

series ordinal

3

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21 June 2017

Masaki Sasai

series ordinal

4

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21 June 2017

Jooyoung Lee

series ordinal

6

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21 June 2017

language of work or name

English

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publication date

20 May 2011

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21 June 2017

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21 June 2017

volume

79

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21 June 2017

issue

8

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21 June 2017

page(s)

2403-2417

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Toward high-resolution de novo structure prediction for small proteins.

21 June 2017

cites work

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https://api.crossref.org/works/10.1002%2FPROT.23059

Ab initio modeling of small proteins by iterative TASSER simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

New Monte Carlo algorithms for protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

New Monte Carlo algorithm: Entropic sampling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Multiple sequence alignment by conformational space annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Structure optimization by conformational space annealing in an off-lattice protein model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Prediction of protein tertiary structure using PROFESY, a novel method based on fragment assembly and conformational space annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Study of protein-protein interaction using conformational space annealing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

High accuracy template based modeling by global optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Effective energy function for proteins in lipid membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

A multi-objective evolutionary approach to the protein structure prediction problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Assessment of CASP8 structure predictions for template free targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

All-atom empirical potential for molecular modeling and dynamics studies of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

PISCES: a protein sequence culling server

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithms.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Protein structure prediction using Rosetta

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

A composite score for predicting errors in protein structure models

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Local quality assessment in homology models using statistical potentials and support vector machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Loop modeling: Sampling, filtering, and scoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Assessment of CASP7 predictions in the high accuracy template-based modeling category

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Scoring function for automated assessment of protein structure template quality

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Target domain definition and classification in CASP8

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

How significant is a protein structure similarity with TM-score = 0.5?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

The PSIPRED protein structure prediction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

Prediction of coordination number and relative solvent accessibility in proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

MUFOLD: A new solution for protein 3D structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.23059

21 January 2018

Identifiers

DOI

10.1002/PROT.23059

1 reference

21 June 2017

1 reference