(Q30381372)

21 June 2017

title

Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments. (English)

1 reference

protein structure prediction

21 June 2017

main subject

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1 reference

3

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21 June 2017

Gearóid Fox

1

1 reference

21 June 2017

Fabian Sievers

series ordinal

2

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21 June 2017

language of work or name

English

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publication date

14 November 2015

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21 June 2017

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21 June 2017

volume

32

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21 June 2017

issue

6

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21 June 2017

page(s)

814-820

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Creative Commons Attribution 4.0 International

21 June 2017

copyright license

start time

13 October 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Sequence embedding for fast construction of guide trees for multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Simple chained guide trees give high-quality protein multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Reply to Tan et al.: Differences between real and simulated proteins in multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Phylogenetic assessment of alignments reveals neglected tree signal in gaps

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Profile hidden Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Pfam: the protein families database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

CLUSTAL V: improved software for multiple sequence alignment

21 January 2018

2 references

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

21 January 2018

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5939968

Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment.

26 November 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

FreeContact: fast and free software for protein contact prediction from residue co-evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Clustal W and Clustal X version 2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

A novel method for prokaryotic promoter prediction based on DNA stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

An algorithm for progressive multiple alignment of sequences with insertions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Protein 3D structure computed from evolutionary sequence variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Protein structure prediction from sequence variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

A new balance index for phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

HOMSTRAD: a database of protein structure alignments for homologous families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Systematic exploration of guide-tree topology effects for small protein alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

ROCR: visualizing classifier performance in R

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Prediction of contacts from correlated sequence substitutions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

CMView: interactive contact map visualization and analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

A Mathematical Theory of Evolution, Based on the Conclusions of Dr. J. C. Willis, F.R.S

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTV592

Kalign--an accurate and fast multiple sequence alignment algorithm

21 January 2018

1 reference

PubMed Central

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5939968

10.1093/BIOINFORMATICS/BTV592

26 November 2018

Identifiers

DOI

1 reference

journals/bioinformatics/FoxSH16

21 June 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

PMC publication ID

5939968

0 references

1 reference