(Q30421603)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23007849%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

title

Rotamer decomposition and protein dynamics: efficiently analyzing dihedral populations from molecular dynamics (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23007849%20AND%20SRC:MED&resulttype=core&format=json

molecular dynamics simulation

9 March 2020

main subject

0 references

1 reference

Thomas Steinbrecher

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23007849%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

publication date

25 September 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23007849%20AND%20SRC:MED&resulttype=core&format=json

Journal of Computational Chemistry

9 March 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23007849%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

volume

34

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23007849%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23007849%20AND%20SRC:MED&resulttype=core&format=json

9 March 2020

page(s)

198-205

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23007849%20AND%20SRC:MED&resulttype=core&format=json

Atomic-level characterization of the structural dynamics of proteins

9 March 2020

cites work

1 reference

Microsecond molecular dynamics simulation shows effect of slow loop dynamics on backbone amide order parameters of proteins

21 January 2018

1 reference

Potential energy functions for protein design.

21 January 2018

1 reference

Biomolecular simulation and modelling: status, progress and prospects

21 January 2018

1 reference

Towards accurate free energy calculations in ligand protein-binding studies

21 January 2018

1 reference

Accommodating protein flexibility for structure-based drug design

21 January 2018

1 reference

From helix-coil transitions to protein folding.

21 January 2018

1 reference

Systematic validation of protein force fields against experimental data

21 January 2018

1 reference

Force fields for protein simulations

21 January 2018

1 reference

The Amber biomolecular simulation programs

21 January 2018

1 reference

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

21 January 2018

1 reference

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

1 reference

21 January 2018

The Protein Data Bank

1 reference

The Protein Data Bank: a computer-based archival file for macromolecular structures

21 January 2018

1 reference

Structure of bacteriophage T4 lysozyme refined at 1.7 A resolution

21 January 2018

1 reference

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew

21 January 2018

1 reference

VMD: visual molecular dynamics

21 January 2018

1 reference

Unsupervised learning of finite mixture models

21 January 2018

1 reference

Protein bioinformatics and mixtures of bivariate von Mises distributions for angular data

21 January 2018

1 reference

Dihedral angle principal component analysis of molecular dynamics simulations.

21 January 2018

1 reference

GeoPCA: a new tool for multivariate analysis of dihedral angles based on principal component geodesics.

21 January 2018

1 reference

Fragment-HMM: a new approach to protein structure prediction

21 January 2018

1 reference

A generative, probabilistic model of local protein structure

21 January 2018

1 reference

Support vector machines for prediction of dihedral angle regions

21 January 2018

1 reference

Residue-rotamer-reduction algorithm for the protein side-chain conformation problem.

21 January 2018

1 reference

Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping

21 January 2018

1 reference

DTA: dihedral transition analysis for characterization of the effects of large main-chain dihedral changes in proteins.

21 January 2018

1 reference

Automated electron-density sampling reveals widespread conformational polymorphism in proteins

21 January 2018

1 reference

Accessing protein conformational ensembles using room-temperature X-ray crystallography

21 January 2018

1 reference

New tools provide new insights in NMR studies of protein dynamics

21 January 2018

1 reference

Analysis of deuterium relaxation-derived methyl axis order parameters and correlation with local structure

21 January 2018

1 reference

Simultaneous determination of protein structure and dynamics.

21 January 2018

1 reference

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

Model-based clustering of multivariate skew data with circular components and missing values

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/JCC.23119

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23007849%20AND%20SRC:MED&resulttype=core&format=json

journals/jcc/WatanabeES13

9 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

release_5uthv5zkmjfhtphbzd4temfa7y

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5uthv5zkmjfhtphbzd4temfa7y

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference