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Protein Structure Refinement through Structure Selection and Averaging from Molecular Dynamics Ensembles.
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Europe PubMed Central
PMC publication ID
3603382
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23526422%20AND%20SRC:MED&resulttype=core&format=json
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27 February 2020
title
Protein Structure Refinement through Structure Selection and Averaging from Molecular Dynamics Ensembles
(English)
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PMC publication ID
3603382
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27 February 2020
main subject
molecular dynamics simulation
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protein structure
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author
Vahid Mirjalili
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1
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Europe PubMed Central
PMC publication ID
3603382
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23526422%20AND%20SRC:MED&resulttype=core&format=json
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27 February 2020
author name string
Michael Feig
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2
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PMC publication ID
3603382
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27 February 2020
publication date
22 December 2012
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3603382
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27 February 2020
published in
Journal of Chemical Theory and Computation
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3603382
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27 February 2020
volume
9
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3603382
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27 February 2020
issue
2
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Europe PubMed Central
PMC publication ID
3603382
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23526422%20AND%20SRC:MED&resulttype=core&format=json
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27 February 2020
page(s)
1294-1303
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3603382
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27 February 2020
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Protein structure prediction: when is it useful?
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Ab initio folding of terminal segments with secondary structures reveals the fine difference between two closely related all-atom statistical energy functions
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Near-native structure refinement using in vacuo energy minimization.
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20 June 2018
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20 June 2018
A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.
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20 June 2018
Progress and challenges in high-resolution refinement of protein structure models.
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20 June 2018
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20 June 2018
LGA: A method for finding 3D similarities in protein structures
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3D-Jury: a simple approach to improve protein structure predictions
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Molecular dynamics in the endgame of protein structure prediction.
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Processing and analysis of CASP3 protein structure predictions
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20 June 2018
Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin
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20 June 2018
Comparative protein modelling by satisfaction of spatial restraints
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20 June 2018
Comparison between self-guided Langevin dynamics and molecular dynamics simulations for structure refinement of protein loop conformations.
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26 November 2018
Exploring the potential of template-based modelling
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26 November 2018
Specific interactions for ab initio folding of protein terminal regions with secondary structures.
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26 November 2018
A correlation-based method for the enhancement of scoring functions on funnel-shaped energy landscapes.
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26 November 2018
Improved treatment of the protein backbone in empirical force fields.
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26 November 2018
Application of statistical potentials to protein structure refinement from low resolution ab initio models
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12 December 2020
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3D‐SHOTGUN: A novel, cooperative, fold‐recognition meta‐predictor
1 reference
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PubMed
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retrieved
12 December 2020
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Identifiers
DOI
10.1021/CT300962X
1 reference
stated in
Europe PubMed Central
PMC publication ID
3603382
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23526422%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
PMC publication ID
3603382
1 reference
stated in
Europe PubMed Central
PMC publication ID
3603382
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23526422%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
PubMed publication ID
23526422
1 reference
stated in
Europe PubMed Central
PMC publication ID
3603382
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23526422%20AND%20SRC:MED&resulttype=core&format=json
retrieved
27 February 2020
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