(Q30791863)

14 September 2017

An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data (English)

1 reference

nucleic acid tertiary structure

14 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12736315

31 December 2023

1 reference

https://api.crossref.org/works/10.1093/NAR/GKG362

31 December 2023

1

Aditi Kanhere

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12736315

31 December 2023

author name string

Manju Bansal

series ordinal

2

1 reference

14 September 2017

language of work or name

English

0 references

publication date

1 May 2003

1 reference

14 September 2017

15 May 2003

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12736315

full work available at URL

31 December 2023

https://academic.oup.com/nar/article-pdf/31/10/2647/3972336/gkg362.pdf

file format

Portable Document Format

online access status

open access

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12736315

https://europepmc.org/articles/PMC156044

31 December 2023

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12736315

https://europepmc.org/articles/PMC156044?pdf=render

31 December 2023

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12736315

http://academic.oup.com/nar/article-pdf/31/10/2647/3972336/gkg362.pdf

31 December 2023

file format

Portable Document Format

1 reference

https://api.crossref.org/works/10.1093/NAR/GKG362

31 December 2023

published in

Nucleic Acids Research

1 reference

14 September 2017

31

1 reference

14 September 2017

10

1 reference

14 September 2017

2647-2658

1 reference

A refined prediction method for gel retardation of DNA oligonucleotides from dinucleotide step parameters: reconciliation of DNA bending models with crystal structure data

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Solution structure of an A-tract DNA bend

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Unconventional helical phasing of repetitive DNA motifs reveals their relative bending contributions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Role of architectural elements in combinatorial regulation of initiation of DNA replication in Escherichia coli

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Trinucleotide models for DNA bending propensity: comparison of models based on DNaseI digestion and nucleosome packaging data.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Statistical analysis of DNA duplex structural features

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Crystal structure of CATGGCCATG and its implications for A-tract bending models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Evidence for opposite groove-directed curvature of GGGCCC and AAAAA sequence elements

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Promoters responsive to DNA bending: a common theme in prokaryotic gene expression

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

DNA bending creates favored sites for retroviral integration: an explanation for preferred insertion sites in nucleosomes.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Bending and curvature calculations in B-DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Sequence-dependent bending propensity of DNA as revealed by DNase I: parameters for trinucleotides

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

The ten helical twist angles of B-DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

The locus of sequence-directed and protein-induced DNA bending

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Sequence dependence of the curvature of DNA: a test of the phasing hypothesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Sequence periodicities in chicken nucleosome core DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

The structure of an oligo(dA).oligo(dT) tract and its biological implications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Estimation of wedge components in curved DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

The intrinsic curvature of DNA in solution.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Relationship between curved DNA conformations and slow gel migration

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Hydrophobic interactions in the major groove can influence DNA local structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Calibration of DNA curvature and a unified description of sequence-directed bending

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Effect of polyadenine-containing curved DNA on promoter utilization in Bacillus subtilis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Sequence-induced DNA curvature at the bacteriophage lambda origin of replication

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Rotational orientation of upstream curved DNA affects promoter function in Bacillus subtilis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Effect of the methyl group on DNA bending and curvature: structure of d(GA4U4C)2 in solution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Sequence-directed curvature of DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Systematic characterization of curved DNA segments randomly cloned from Escherichia coli and their functional significance.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Curved DNA without AA/TT dinucleotide step

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Protein-induced bending and DNA cyclization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Environmental Influences on DNA Curvature

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

DNA bending and the curious case of Fos/Jun

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Influence of fluctuations on DNA curvature. A comparison of flexible and static wedge models of intrinsically bent DNA.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156044

Nucleosome structural features and intrinsic properties of the TATAAACGCC repeat sequence

25 November 2018

1 reference

12 December 2020

Conserved patterns of bending in satellite and nucleosome positioning DNA

1 reference

12 December 2020

Physical characterization of a kinetoplast DNA fragment with unusual properties

1 reference

12 December 2020

Base sequence, local helix structure, and macroscopic curvature of A-DNA and B-DNA

1 reference

12 December 2020

Structure of a bent DNA: two-dimensional NMR studies on d(GAAAATTTTC)2

1 reference

12 December 2020

Periodical polydeoxynucleotides and DNA curvature

1 reference

12 December 2020

Base sequence effects in double helical DNA. I. Potential energy estimates of local base morphology

1 reference

12 December 2020

Validity of the nearest-neighbor approximation in the evaluation of the electrophoretic manifestations of DNA curvature

1 reference

12 December 2020

Sequence and structure of cmp, the replication enhancer of the Staphylococcus aureus plasmid pT181

1 reference

12 December 2020

Physiological concentration of magnesium ions induces a strong macroscopic curvature in GGGCCC-containing DNA

1 reference

12 December 2020

CA/TG sequence at the 5' end of oligo(A)-tracts strongly modulates DNA curvature

1 reference

12 December 2020

B-DNA twisting correlates with base-pair morphology.

1 reference

12 December 2020

NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures

1 reference

12 December 2020

Transcriptional activation of the catechol and chlorocatechol operons: variations on a theme

1 reference

12 December 2020

Sequence-directed curvature of DNA

1 reference

12 December 2020

Sequence Elements Responsible for DNA Curvature

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG362

1 reference

14 September 2017

1 reference

14 September 2017

1 reference