(Q30835203)

27 June 2017

title

Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences (English)

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27 June 2017

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2

L Lacey Knowles

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27 June 2017

Huateng Huang

1

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27 June 2017

publication date

4 July 2014

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27 June 2017

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27 June 2017

volume

65

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27 June 2017

issue

3

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27 June 2017

page(s)

357-365

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RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

27 June 2017

cites work

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https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Rapid SNP discovery and genetic mapping using sequenced RAD markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

The (Super)Tree of Life: Procedures, Problems, and Prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Stacks: building and genotyping Loci de novo from short-read sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Resolving postglacial phylogeography using high-throughput sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Bayesian inference of species trees from multilocus data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

PRGmatic: an efficient pipeline for collating genome-enriched second-generation sequencing data using a 'provisional-reference genome'.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Effects of missing data on species tree estimation under the coalescent

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Generating samples under a Wright-Fisher neutral model of genetic variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Full modeling versus summarizing gene-tree uncertainty: method choice and species-tree accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Anchored hybrid enrichment for massively high-throughput phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Inferring phylogeny despite incomplete lineage sorting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Genotype and SNP calling from next-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Differences in DNA methylation patterns are detectable during the dimorphic transition of fungi by amplification of restriction polymorphisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Impact of missing data on phylogenies inferred from empirical phylogenomic data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Inferring phylogenies from RAD sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

A rapid bootstrap algorithm for the RAxML Web servers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

An assessment of accuracy, error, and conflict with support values from genome-scale phylogenetic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Missing data, incomplete taxa, and phylogenetic accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Missing data and the design of phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Algorithms for MDC-based multi-locus phylogeny inference: beyond rooted binary gene trees on single alleles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

Deep phylogeographic structure and environmental differentiation in the carnivorous plant Sarracenia alata

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU046

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYU046

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27 June 2017

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