(Q30844402)

14 October 2017

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance (English)

1 reference

14 October 2017

1 reference

1 reference

Danielle Thierry-Mieg

5

Danielle Thierry-Mieg

0 references

Michele Filosi

Michele Filosi

35

0 references

Roberto Visintainer

Roberto Visintainer

36

0 references

Florian Caiment

Florian Caiment

19

0 references

Samantha Riccadonna

Samantha Riccadonna

34

0 references

Marco Chierici

Marco Chierici

31

0 references

Lee Lancashire

Lee J Lancashire

27

0 references

Binsheng Gong

Binsheng Gong

2

0 references

Davide Albanese

Davide Albanese

32

0 references

Jean Thierry-Mieg

Jean Thierry-Mieg

4

0 references

Giuseppe Jurman

Giuseppe Jurman

33

0 references

Jos Kleinjans

21

Jos Kleinjans

1 reference

14 October 2017

46

Weida Tong

1 reference

14 October 2017

43

Leming Shi

1 reference

14 October 2017

15

Paweł P Łabaj

1 reference

14 October 2017

Youping Deng

42

0 references

Andreas Scherer

Andreas Scherer

22

0 references

Richard Paules

Richard S Paules

44

0 references

Huixiao Hong

Huixiao Hong

8

0 references

James C Fuscoe

41

James C Fuscoe

1 reference

14 October 2017

30

Cesare Furlanello

1 reference

14 October 2017

28

Marina Bessarabova

1 reference

14 October 2017

17

Dalila Megherbi

1 reference

14 October 2017

3

Pierre R Bushel

1 reference

14 October 2017

16

David P Kreil

1 reference

14 October 2017

Charles Wang

1

1 reference

14 October 2017

Joshua Xu

6

1 reference

14 October 2017

Hong Fang

7

1 reference

14 October 2017

Jie Shen

9

1 reference

14 October 2017

Zhenqiang Su

10

1 reference

14 October 2017

Joe Meehan

11

1 reference

14 October 2017

Xiaojin Li

12

1 reference

14 October 2017

Lu Yang

13

1 reference

14 October 2017

Haiqing Li

14

1 reference

14 October 2017

Stan Gaj

18

1 reference

14 October 2017

Joost van Delft

20

1 reference

14 October 2017

Viswanath Devanarayan

23

1 reference

14 October 2017

Jian Wang

24

1 reference

14 October 2017

Yong Yang

25

1 reference

14 October 2017

Hui-Rong Qian

26

1 reference

14 October 2017

Yuri Nikolsky

29

1 reference

14 October 2017

Ke K Zhang

37

1 reference

14 October 2017

Jianying Li

38

1 reference

14 October 2017

Jui-Hua Hsieh

39

1 reference

14 October 2017

Daniel L Svoboda

40

1 reference

14 October 2017

Scott S Auerbach

45

1 reference

14 October 2017

24 August 2014

1 reference

14 October 2017

1 reference

14 October 2017

32

1 reference

14 October 2017

9

1 reference

14 October 2017

926-932

1 reference

describes a project that uses

14 October 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/4243706

based on heuristic

inferred from PubMed Central ID database lookup

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Dynamic expression of 3' UTRs revealed by Poisson hidden Markov modeling of RNA-Seq: implications in gene expression profiling

1 reference

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RNA-Seq profiling reveals novel hepatic gene expression pattern in aflatoxin B1 treated rats

14 July 2018

1 reference

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Comparative RNA-Seq and microarray analysis of gene expression changes in B-cell lymphomas of Canis familiaris.

14 July 2018

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Comparative study of RNA-seq- and microarray-derived coexpression networks in Arabidopsis thaliana.

14 July 2018

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RNA-Seq vs dual- and single-channel microarray data: sensitivity analysis for differential expression and clustering

14 July 2018

1 reference

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Revisiting global gene expression analysis

14 July 2018

1 reference

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A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae

14 July 2018

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A decade of toxicogenomic research and its contribution to toxicological science

14 July 2018

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A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease

14 July 2018

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Gene-expression measurement: variance-modeling considerations for robust data analysis

14 July 2018

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Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys

14 July 2018

1 reference

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Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.

14 July 2018

1 reference

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RNA-seq: technical variability and sampling.

14 July 2018

1 reference

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Microarrays, deep sequencing and the true measure of the transcriptome

14 July 2018

1 reference

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Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays

14 July 2018

1 reference

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Human transcriptome array for high-throughput clinical studies.

14 July 2018

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RNA sequencing shows no dosage compensation of the active X-chromosome

14 July 2018

1 reference

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Analysis and design of RNA sequencing experiments for identifying isoform regulation

14 July 2018

1 reference

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Differential expression analysis for sequence count data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243706

Ontology-based meta-analysis of global collections of high-throughput public data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243706

The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models

14 July 2018

1 reference

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Consistency of predictive signature genes and classifiers generated using different microarray platforms.

14 July 2018

1 reference

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A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

14 July 2018

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

14 July 2018

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TopHat: discovering splice junctions with RNA-Seq

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243706

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

14 July 2018

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RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

14 July 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

14 July 2018

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Rat toxicogenomic study reveals analytical consistency across microarray platforms

14 July 2018

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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

14 July 2018

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AceView: a comprehensive cDNA-supported gene and transcripts annotation

14 July 2018

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Microarray scanner calibration curves: characteristics and implications

14 July 2018

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Development of a large-scale chemogenomics database to improve drug candidate selection and to understand mechanisms of chemical toxicity and action

14 July 2018

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Signal transduction pathway profiling of individual tumor samples

14 July 2018

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Summaries of Affymetrix GeneChip probe level data

14 July 2018

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Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

14 July 2018

1 reference

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The TRANSFAC system on gene expression regulation.

14 July 2018

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TRANSFAC: an integrated system for gene expression regulation

14 July 2018

1 reference

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Overview of BioCreAtIvE task 1B: normalized gene lists

14 July 2018

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The External RNA Controls Consortium: a progress report.

21 January 2018

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Analysis of high density expression microarrays with signed-rank call algorithms.

21 January 2018

1 reference

Advancing regulatory science

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25150839

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A Model-Based Background Adjustment for Oligonucleotide Expression Arrays

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection

1 reference

6 June 2024

https://opencitations.net/index/api/v1/references/10.1038/NBT.3001

A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium

1 reference

6 June 2024

https://opencitations.net/index/api/v1/references/10.1038/NBT.3001

Identifiers

DOI

10.1038/NBT.3001

1 reference

14 October 2017

1 reference

14 October 2017

PubMed publication ID

25150839

1 reference