(Q31012573)

12 August 2017

Comparing the normalization methods for the differential analysis of Illumina high-throughput RNA-Seq data (English)

1 reference

12 August 2017

1 reference

1 reference

1 reference

Peipei Li

1

1 reference

12 August 2017

Yongjun Piao

series ordinal

2

1 reference

12 August 2017

Ho Sun Shon

series ordinal

3

1 reference

12 August 2017

Keun Ho Ryu

series ordinal

4

1 reference

12 August 2017

language of work or name

1 reference

28 October 2015

1 reference

12 August 2017

1 reference

12 August 2017

16

1 reference

12 August 2017

347

1 reference

describes a project that uses

12 August 2017

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/4625728

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

edgeR

object named as

edgeR Bioconductor

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/s12859-015-0778-7

0 references

cites work

A New Direction of Cancer Classification: Positive Effect of Low-Ranking MicroRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

An ensemble correlation-based gene selection algorithm for cancer classification with gene expression data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

RNA sequencing: platform selection, experimental design, and data interpretation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

QSE: A new 3-D solvent exposure measure for the analysis of protein structure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

From RNA-seq reads to differential expression results

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Differential expression analysis for sequence count data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

A scaling normalization method for differential expression analysis of RNA-seq data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

RNA-Seq gene expression estimation with read mapping uncertainty

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Next-generation sequencing in aging research: emerging applications, problems, pitfalls and possible solutions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Transcriptome sequencing to detect gene fusions in cancer

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

RNA-Seq: a revolutionary tool for transcriptomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Mapping and quantifying mammalian transcriptomes by RNA-Seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

SNP discovery via 454 transcriptome sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Recurrent fusion oncogenes in carcinomas

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Quantitative real-time RT-PCR data analysis: current concepts and the novel "gene expression's CT difference" formula

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

28 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

28 July 2018

https://api.crossref.org/works/10.1186%2FS12859-015-0778-7

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

Initial sequencing and analysis of the human genome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625728

A novel approach for predicting disordered regions in a protein sequence.

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0778-7

Next-generation sequencing transforms today's biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0778-7

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0778-7

Accurate quantification of transcriptome from RNA-Seq data by effective length normalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0778-7

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0778-7

The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12859-015-0778-7

10.1186/S12859-015-0778-7

21 January 2018

Identifiers

DOI

1 reference

12 August 2017

journals/bmcbi/LiPSR15

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

12 August 2017

PubMed publication ID

26511205

1 reference