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Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
scientific article
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scholarly article
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Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
title
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
main subject
RNA sequencing
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algorithm
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RNA-Seq
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author
Stephen M. Mount
series ordinal
2
1 reference
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Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
Rob Patro
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1
object named as
Rob Patro
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Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
author name string
Carl Kingsford
series ordinal
3
1 reference
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Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
publication date
20 April 2014
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Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
published in
Nature Biotechnology
1 reference
stated in
Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
volume
32
1 reference
stated in
Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
issue
5
1 reference
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Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
page(s)
462-464
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Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
exact match
https://scigraph.springernature.com/pub.10.1038/nbt.2862
0 references
cites work
Statistical Modeling of RNA-Seq Data.
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stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4077321
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4 July 2018
CRAC: an integrated approach to the analysis of RNA-seq reads
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PubMed Central
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4 July 2018
A comparison of methods for differential expression analysis of RNA-seq data
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4 July 2018
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PubMed Central
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4 July 2018
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4 July 2018
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4 July 2018
KISSPLICE: de-novo calling alternative splicing events from RNA-seq data
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4 July 2018
Personalized oncology through integrative high-throughput sequencing: a pilot study
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4 July 2018
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
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4 July 2018
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
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4 July 2018
Bias detection and correction in RNA-Sequencing data
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4 July 2018
Full-length transcriptome assembly from RNA-Seq data without a reference genome
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4 July 2018
Estimation of alternative splicing isoform frequencies from RNA-Seq data
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4 July 2018
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
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4 July 2018
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
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4 July 2018
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4077321
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4 July 2018
TopHat: discovering splice junctions with RNA-Seq
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4 July 2018
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
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4 July 2018
Mapping and quantifying mammalian transcriptomes by RNA-Seq
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The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
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1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1038%2FNBT.2862
retrieved
21 January 2018
Identifiers
DOI
10.1038/NBT.2862
1 reference
stated in
Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
arXiv ID
1308.3700
1 reference
stated in
Unpaywall
PMC publication ID
4077321
1 reference
stated in
Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
PubMed publication ID
24752080
1 reference
stated in
Europe PubMed Central
PMC publication ID
4077321
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24752080%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 March 2020
ResearchGate publication ID
261770842
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