(Q33353249)

26 July 2017

title

Cell type-specific transcriptional profiling: implications for metabolite profiling (English)

1 reference

26 July 2017

4

Asaph Aharoni

1 reference

26 July 2017

5

Philip N Benfey

1 reference

26 July 2017

Eric D Rogers

1

1 reference

26 July 2017

Terry Jackson

series ordinal

2

1 reference

26 July 2017

Arieh Moussaieff

series ordinal

3

1 reference

26 July 2017

publication date

1 April 2012

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26 July 2017

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26 July 2017

volume

70

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26 July 2017

issue

1

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26 July 2017

page(s)

5-17

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Tissue- and cell-type specific transcriptome profiling of expanding tomato fruit provides insights into metabolic and regulatory specialization and cuticle formation

26 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Cell identity regulators link development and stress responses in the Arabidopsis root

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Genome-wide transcriptome dissection of the rice root system: implications for developmental and physiological functions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

RNA-seq discovery, functional characterization, and comparison of sesquiterpene synthases from Solanum lycopersicum and Solanum habrochaites trichomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Many needles in a haystack: cell-type specific abiotic stress responses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

MALDI-imaging mass spectrometry - An emerging technique in plant biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Polymethylated myricetin in trichomes of the wild tomato species Solanum habrochaites and characterization of trichome-specific 3'/5'- and 7/4'-myricetin O-methyltransferases.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

A stele-enriched gene regulatory network in the Arabidopsis root

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Expression Profiling of Tobacco Leaf Trichomes Identifies Genes for Biotic and Abiotic Stresses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

A simple method for gene expression and chromatin profiling of individual cell types within a tissue

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Tomato root transcriptome response to a nitrogen-enriched soil patch

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Research on plant abiotic stress responses in the post-genome era: past, present and future

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Early transcriptomic changes induced by magnesium deficiency in Arabidopsis thaliana reveal the alteration of circadian clock gene expression in roots and the triggering of abscisic acid-responsive genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Exploring plant transcriptomes using ultra high-throughput sequencing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

'Omics' analyses of regulatory networks in plant abiotic stress responses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Omics meet networks - using systems approaches to infer regulatory networks in plants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

An introduction to liquid chromatography-mass spectrometry instrumentation applied in plant metabolomic analyses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Matrix-free UV-laser desorption/ionization (LDI) mass spectrometric imaging at the single-cell level: distribution of secondary metabolites of Arabidopsis thaliana and Hypericum species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Dissection of symbiosis and organ development by integrated transcriptome analysis of lotus japonicus mutant and wild-type plants.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Direct profiling and imaging of epicuticular waxes on Arabidopsis thaliana by laser desorption/ionization mass spectrometry using silver colloid as a matrix

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Gene expression map of the Arabidopsis shoot apical meristem stem cell niche

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Transcriptional networks in root cell fate specification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Gene expression and metabolism in tomato fruit surface tissues

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

The leaf epidermome of Catharanthus roseus reveals its biochemical specialization

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

A systems biology investigation of the MEP/terpenoid and shikimate/phenylpropanoid pathways points to multiple levels of metabolic control in sweet basil glandular trichomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Cell-specific nitrogen responses mediate developmental plasticity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Comparison of the contributions of the nuclear and cytoplasmic compartments to global gene expression in human cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Transcriptomic and proteomic analyses of pericycle cells of the maize primary root

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Transcriptional profiling of Arabidopsis heat shock proteins and transcription factors reveals extensive overlap between heat and non-heat stress response pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Transcript analysis of early nodulation events in Medicago truncatula.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Cuticular lipid composition, surface structure, and gene expression in Arabidopsis stem epidermis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

A genome-wide transcriptional analysis using Arabidopsis thaliana Affymetrix gene chips determined plant responses to phosphate deprivation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Immunopurification of polyribosomal complexes of Arabidopsis for global analysis of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Transcriptional profile of the Arabidopsis root quiescent center

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Independence and reproducibility across microarray platforms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

A gene expression map of Arabidopsis thaliana development

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Microgenomics: gene expression analysis at the tissue-specific and single-cell levels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Hydrogen peroxide mediates plant root cell response to nutrient deprivation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

A gene expression map of the Arabidopsis root

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Laser capture microdissection of cells from plant tissues

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Laser-capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Nontargeted metabolome analysis by use of Fourier Transform Ion Cyclotron Mass Spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Construction of a specialized cDNA library from plant cells isolated by laser capture microdissection: toward comprehensive analysis of the genes expressed in the rice phloem

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Cell-type-specific calcium responses to drought, salt and cold in the Arabidopsis root

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Calcium signalling in Arabidopsis thaliana responding to drought and salinity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines

21 June 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

A high-resolution root spatiotemporal map reveals dominant expression patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Gene expression profile analysis of tobacco leaf trichomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Cell identity mediates the response of Arabidopsis roots to abiotic stress.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Physiological characterization of Mg deficiency in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Changes in transcriptional profiles are associated with early fruit tissue specialization in tomato

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Identification of candidate genes affecting Delta9-tetrahydrocannabinol biosynthesis in Cannabis sativa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Comparative functional genomic analysis of Solanum glandular trichome types

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Physiological and transcriptomic aspects of urea uptake and assimilation in Arabidopsis plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Extensive metabolic cross-talk in melon fruit revealed by spatial and developmental combinatorial metabolomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Development and evaluation of an Arabidopsis whole genome Affymetrix probe array

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

A systems biology approach identifies the biochemical mechanisms regulating monoterpenoid essential oil composition in peppermint

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Studies of a biochemical factory: tomato trichome deep expressed sequence tag sequencing and proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Genetic networks controlling structural outcome of glucosinolate activation across development

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

Transcriptome analyses give insights into selenium-stress responses and selenium tolerance mechanisms in Arabidopsis.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3315153

Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry

31 October 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04888.X

13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research

21 January 2018

1 reference

12 December 2020

Regulation of the Arabidopsis transcriptome by oxidative stress

1 reference

12 December 2020

Reactive oxygen species and root hairs in Arabidopsis root response to nitrogen, phosphorus and potassium deficiency

1 reference

12 December 2020

Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots

1 reference

12 December 2020

10.1111/J.1365-313X.2012.04888.X

Identifiers

DOI

1 reference

26 July 2017

1 reference

26 July 2017

1 reference