(Q33798562)

29 July 2017

title

False negative rates in Drosophila cell-based RNAi screens: a case study (English)

1 reference

29 July 2017

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Anastasia A. Samsonova

object named as

Anastasia A Samsonova

2

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Stephanie E Mohr

object named as

Stephanie E Mohr

5

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Norbert Perrimon

object named as

Norbert Perrimon

6

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author name string

Matthew Booker

1

1 reference

29 July 2017

Young Kwon

3

1 reference

29 July 2017

Ian Flockhart

4

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29 July 2017

language of work or name

English

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publication date

20 January 2011

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29 July 2017

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29 July 2017

volume

12

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29 July 2017

page(s)

50

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The transcriptional diversity of 25 Drosophila cell lines

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Host factors required for modulation of phagosome biogenesis and proliferation of Francisella tularensis within the cytosol

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Vectors and parameters that enhance the efficacy of RNAi-mediated gene disruption in transgenic Drosophila

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Genomic screening with RNAi: results and challenges

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

In vivo RNAi rescue in Drosophila melanogaster with genomic transgenes from Drosophila pseudoobscura

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Genome-wide RNAi screen identifies Letm1 as a mitochondrial Ca2+/H+ antiporter

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Cross-species RNAi rescue platform in Drosophila melanogaster

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Statistical methods for analysis of high-throughput RNA interference screens

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

A network-based integrative approach to prioritize reliable hits from multiple genome-wide RNAi screens in Drosophila

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Discovery of insect and human dengue virus host factors

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

TopHat: discovering splice junctions with RNA-Seq

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Determination of sample size in genome-scale RNAi screens

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

FlyBase: enhancing Drosophila Gene Ontology annotations

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Identification of JAK/STAT pathway regulators--insights from RNAi screens

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Off-target effects of siRNA specific for GFP

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

A case study of the reproducibility of transcriptional reporter cell-based RNAi screens in Drosophila

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Design and implementation of high-throughput RNAi screens in cultured Drosophila cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

A new method with flexible and balanced control of false negatives and false positives for hit selection in RNA interference high-throughput screening assays

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Evidence of off-target effects associated with long dsRNAs in Drosophila melanogaster cell-based assays

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Prevalence of off-target effects in Drosophila RNA interference screens

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

JAK/STAT signalling in Drosophila: insights into conserved regulatory and cellular functions

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Widespread siRNA "off-target" transcript silencing mediated by seed region sequence complementarity

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

3' UTR seed matches, but not overall identity, are associated with RNAi off-targets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

FlyRNAi: the Drosophila RNAi screening center database.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Genome-wide RNAi analysis of JAK/STAT signaling components in Drosophila

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Functional genomic analysis of the Wnt-wingless signaling pathway

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Open source clustering software

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

Protein kinases and phosphatases in the Drosophila genome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3036618

High-throughput RNAi screening in cultured cells: a user's guide.

4 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-50

RNAiCut: automated detection of significant genes from functional genomic screens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-50

Systems survey of endocytosis by multiparametric image analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-50

A probability-based approach for the analysis of large-scale RNAi screens.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-50

Cell biology. A revolving door for calcium

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-50

Minimizing the risk of reporting false positives in large-scale RNAi screens

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-50

A genome-wide RNA interference screen in Drosophila melanogaster cells for new components of the Hh signaling pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-50

21 January 2018

Identifiers

DOI

10.1186/1471-2164-12-50

1 reference

Dimensions Publication ID

29 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-50

9 September 2019

1 reference

29 July 2017

1 reference