(Q33922903)

30 July 2017

title

CRISPulator: a discrete simulation tool for pooled genetic screens (English)

1 reference

30 July 2017

Martin Kampmann

2

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author name string

Tamas Nagy

series ordinal

1

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30 July 2017

publication date

21 July 2017

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30 July 2017

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30 July 2017

volume

18

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30 July 2017

issue

1

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30 July 2017

page(s)

347

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describes a project that uses

30 July 2017

Jupyter notebook file

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https://scigraph.springernature.com/pub.10.1186/s12859-017-1759-9

exact match

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cites work

Suppression of B-cell development genes is key to glucocorticoid efficacy in treatment of acute lymphoblastic leukemia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Compact and highly active next-generation libraries for CRISPR-mediated gene repression and activation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Functional CRISPR screening identifies the ufmylation pathway as a regulator of SQSTM1/p62

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

CRISPR knockout screening outperforms shRNA and CRISPRi in identifying essential genes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Targeting the AAA ATPase p97 as an Approach to Treat Cancer through Disruption of Protein Homeostasis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Paradoxical resistance of multiple myeloma to proteasome inhibitors by decreased levels of 19S proteasomal subunits

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Next-generation libraries for robust RNA interference-based genome-wide screens.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Pharmacological dimerization and activation of the exchange factor eIF2B antagonizes the integrated stress response

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

High-throughput functional genomics using CRISPR-Cas9.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

The Power Decoder Simulator for the Evaluation of Pooled shRNA Screen Performance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Genome-Scale CRISPR-Mediated Control of Gene Repression and Activation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Genome-scale CRISPR-Cas9 knockout screening in human cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Genetic screens in human cells using the CRISPR-Cas9 system

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Integrated platform for genome-wide screening and construction of high-density genetic interaction maps in mammalian cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Optimized PCR conditions and increased shRNA fold representation improve reproducibility of pooled shRNA screens

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Functional identification of optimized RNAi triggers using a massively parallel sensor assay

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Statistical mixture modeling for cell subtype identification in flow cytometry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5521134

Molecular biology. Use and abuse of RNAi to study mammalian gene function

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-017-1759-9

A CRISPR Approach to Neurodegenerative Diseases

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-017-1759-9

10.1186/S12859-017-1759-9

21 January 2018

Identifiers

DOI

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30 July 2017

DBLP publication ID

journals/bmcbi/NagyK17

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

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30 July 2017

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