(Q34049214)

30 July 2017

title

Normalization, testing, and false discovery rate estimation for RNA-sequencing data (English)

1 reference

30 July 2017

4

Robert Tibshirani

1 reference

30 July 2017

2

Daniela M Witten

1 reference

30 July 2017

3

Iain M Johnstone

1 reference

30 July 2017

Jun Li

1

1 reference

30 July 2017

publication date

14 October 2011

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30 July 2017

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30 July 2017

volume

13

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30 July 2017

issue

3

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30 July 2017

page(s)

523-538

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Differential expression analysis for sequence count data

30 July 2017

cites work

1 reference

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baySeq: empirical Bayesian methods for identifying differential expression in sequence count data

5 July 2018

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A two-parameter generalized Poisson model to improve the analysis of RNA-seq data

5 July 2018

1 reference

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Modeling non-uniformity in short-read rates in RNA-Seq data

5 July 2018

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Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls

5 July 2018

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Biases in Illumina transcriptome sequencing caused by random hexamer priming

5 July 2018

1 reference

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A scaling normalization method for differential expression analysis of RNA-seq data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

5 July 2018

1 reference

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

5 July 2018

1 reference

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DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

5 July 2018

1 reference

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Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays

5 July 2018

1 reference

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Transcript length bias in RNA-seq data confounds systems biology

5 July 2018

1 reference

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RNA-Seq-quantitative measurement of expression through massively parallel RNA-sequencing

5 July 2018

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

5 July 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

5 July 2018

1 reference

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The transcriptional landscape of the yeast genome defined by RNA sequencing

5 July 2018

1 reference

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Moderated statistical tests for assessing differences in tag abundance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Overdispersed logistic regression for SAGE: modelling multiple groups and covariates

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Statistical significance for genomewide studies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Analysis of variance for gene expression microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Significance analysis of microarrays applied to the ionizing radiation response

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

DNA arrays for analysis of gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Exploring the new world of the genome with DNA microarrays

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

Exploring the metabolic and genetic control of gene expression on a genomic scale

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3372940

The beginning of the end for microarrays?

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOSTATISTICS%2FKXR031

A direct approach to false discovery rates

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOSTATISTICS%2FKXR031

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOSTATISTICS%2FKXR031

10.1093/BIOSTATISTICS/KXR031

21 January 2018

Identifiers

DOI

1 reference

30 July 2017

1 reference

30 July 2017

1 reference