(Q34097299)

31 July 2017

title

Protein loop closure using orientational restraints from NMR data (English)

1 reference

31 July 2017

Pei Zhou

3

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author name string

Chittaranjan Tripathy

series ordinal

1

1 reference

31 July 2017

Jianyang Zeng

series ordinal

2

1 reference

31 July 2017

Bruce Randall Donald

series ordinal

4

1 reference

31 July 2017

language of work or name

English

0 references

publication date

13 December 2011

1 reference

31 July 2017

1 reference

31 July 2017

volume

80

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31 July 2017

issue

2

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31 July 2017

page(s)

433-453

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The program XEASY for computer-supported NMR spectral analysis of biological macromolecules

31 July 2017

cites work

1 reference

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

5 July 2018

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5 July 2018

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The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles

5 July 2018

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A structural basis for the allosteric regulation of non-hydrolysing UDP-GlcNAc 2-epimerases

5 July 2018

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5 July 2018

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High-resolution design of a protein loop

5 July 2018

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Allosteric Inhibition of the Protein-Protein Interaction between the Leukemia-Associated Proteins Runx1 and CBFβ

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Targeted molecular dynamics study of C-loop closure and channel gating in nicotinic receptors

5 July 2018

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NMR residual dipolar couplings as probes of biomolecular dynamics

5 July 2018

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Progress in modeling of protein structures and interactions

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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Cyclic coordinate descent: A robotics algorithm for protein loop closure.

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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A dipolar coupling based strategy for simultaneous resonance assignment and structure determination of protein backbones

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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PDB-based protein loop prediction: parameters for selection and methods for optimization.

5 July 2018

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Predicting the conformational class of short and medium size loops connecting regular secondary structures: application to comparative modelling

5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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5 July 2018

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21 January 2018

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21 January 2018

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21 January 2018

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An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent.

21 January 2018

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21 January 2018

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21 January 2018

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Determination of protein global folds using backbone residual dipolar coupling and long-range NOE restraints.

21 January 2018

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21 January 2018

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Exact solutions for internuclear vectors and backbone dihedral angles from NH residual dipolar couplings in two media, and their application in a systematic search algorithm for determining protein backbone structure

21 January 2018

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A novel ensemble-based scoring and search algorithm for protein redesign and its application to modify the substrate specificity of the gramicidin synthetase a phenylalanine adenylation enzyme

21 January 2018

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PACES: Protein sequential assignment by computer-assisted exhaustive search.

21 January 2018

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Measurement of one-bond 13Calpha-1Halpha residual dipolar coupling constants in proteins by selective manipulation of CalphaHalpha spins.

21 January 2018

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Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy

21 January 2018

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NMR: prediction of molecular alignment from structure using the PALES software

21 January 2018

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Toward better refinement of comparative models: predicting loops in inexact environments

21 January 2018

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Protein conformational flexibility from structure-free analysis of NMR dipolar couplings: quantitative and absolute determination of backbone motion in ubiquitin.

21 January 2018

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Efficient inverse kinematics for general 6R manipulators

21 January 2018

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Ultrahigh-Resolution Backbone Structure of Perdeuterated Protein GB1 Using Residual Dipolar Couplings from Two Alignment Media

21 January 2018

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Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase

21 January 2018

1 reference

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A Hausdorff-based NOE assignment algorithm using protein backbone determined from residual dipolar couplings and rotamer patterns.

21 January 2018

1 reference

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3D structural homology detection via unassigned residual dipolar couplings.

28 October 2018

1 reference

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High-throughput 3D structural homology detection via NMR resonance assignment.

28 October 2018

1 reference

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An efficient and accurate algorithm for assigning nuclear overhauser effect restraints using a rotamer library ensemble and residual dipolar couplings.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3305838

Ultrahigh-Resolution Backbone Structure of Perdeuterated Protein GB1 Using Residual Dipolar Couplings from Two Alignment Media

28 October 2018

1 reference

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Conformational sampling using high-temperature molecular dynamics

28 October 2018

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12 December 2020

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12 December 2020

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Identifiers

DOI

10.1002/PROT.23207

1 reference

31 July 2017

1 reference

31 July 2017

1 reference