(Q34106505)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

title

Bioinformatics tools and databases for analysis of next-generation sequence data (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

David Edwards

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

5

Chris Duran

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

author name string

Hong C Lee

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Michal Tadeusz Lorenc

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

Michael Imelfort

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

publication date

19 December 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

Briefings in functional genomics

19 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

19 January 2020

page(s)

12-24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22184335%20AND%20SRC:MED&resulttype=core&format=json

De novo sequencing of plant genomes using second-generation technologies

19 January 2020

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21 January 2018

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A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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ALLPATHS: de novo assembly of whole-genome shotgun microreads

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler

21 January 2018

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21 January 2018

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An Eulerian path approach to DNA fragment assembly

21 January 2018

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21 January 2018

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SOAP: short oligonucleotide alignment program

21 January 2018

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De novo assembly of human genomes with massively parallel short read sequencing

21 January 2018

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The diploid genome sequence of an Asian individual

21 January 2018

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The genome of the mesopolyploid crop species Brassica rapa

21 January 2018

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Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

21 January 2018

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Toward simplifying and accurately formulating fragment assembly

21 January 2018

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The UCSC Genome Browser Database: 2008 update

21 January 2018

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21 January 2018

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

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BFAST: an alignment tool for large scale genome resequencing

21 January 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

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The Sequence Alignment/Map format and SAMtools

21 January 2018

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TopHat: discovering splice junctions with RNA-Seq

21 January 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

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SOAP2: an improved ultrafast tool for short read alignment

21 January 2018

1 reference

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Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing

21 January 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

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SHRiMP: accurate mapping of short color-space reads

21 January 2018

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SHRiMP2: sensitive yet practical SHort Read Mapping

21 January 2018

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Targeted identification of genomic regions using TAGdb

21 January 2018

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A greedy algorithm for aligning DNA sequences

21 January 2018

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Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

21 January 2018

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A general approach to single-nucleotide polymorphism discovery.

21 January 2018

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High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

21 January 2018

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SNP discovery via 454 transcriptome sequencing

21 January 2018

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Quality scores and SNP detection in sequencing-by-synthesis systems

21 January 2018

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Redundancy based detection of sequence polymorphisms in expressed sequence tag data using autoSNP.

21 January 2018

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Mining for single nucleotide polymorphisms and insertions/deletions in maize expressed sequence tag data

21 January 2018

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AutoSNPdb: an annotated single nucleotide polymorphism database for crop plants

21 January 2018

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Single nucleotide polymorphism discovery in barley using autoSNPdb

21 January 2018

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Discovering genetic polymorphisms in next-generation sequencing data

21 January 2018

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Genome-wide patterns of genetic variation among elite maize inbred lines

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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SSRPrimer and SSR Taxonomy Tree: Biome SSR discovery

21 January 2018

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Microsatellite discovery by deep sequencing of enriched genomic libraries

21 January 2018

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Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing

21 January 2018

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21 January 2018

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21 January 2018

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Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format

21 January 2018

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Consed: a graphical tool for sequence finishing

21 January 2018

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Tablet--next generation sequence assembly visualization

21 January 2018

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Integrative genomics viewer

21 January 2018

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Savant: genome browser for high-throughput sequencing data

21 January 2018

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MagicViewer: integrated solution for next-generation sequencing data visualization and genetic variation detection and annotation

21 January 2018

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

21 January 2018

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The variant call format and VCFtools

21 January 2018

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Genome sequence data: management, storage, and visualization

21 January 2018

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