(Q34123325)

31 July 2017

title

Extensive up-regulation of gene expression in cancer: the normalised use of microarray data (English)

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31 July 2017

Hongwei Wang

11

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author name string

Dong Wang

1

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31 July 2017

Lixin Cheng

2

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31 July 2017

Yuannv Zhang

3

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31 July 2017

Ruihong Wu

4

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31 July 2017

Mingyue Wang

5

1 reference

31 July 2017

Yunyan Gu

6

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31 July 2017

Wenyuan Zhao

7

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31 July 2017

Pengfei Li

8

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31 July 2017

Bin Li

9

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31 July 2017

Yujing Zhang

10

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31 July 2017

Yan Huang

12

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31 July 2017

Chenguang Wang

13

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31 July 2017

Zheng Guo

14

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31 July 2017

publication date

10 January 2012

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31 July 2017

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31 July 2017

volume

8

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31 July 2017

issue

3

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31 July 2017

page(s)

818-827

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https://api.crossref.org/works/10.1039%2FC2MB05466C

31 July 2017

1 reference

Microarrays as cancer keys: an array of possibilities.

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Microarray data normalization and transformation

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

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Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection

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Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes

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Apparently low reproducibility of true differential expression discoveries in microarray studies

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The effects of normalization on the correlation structure of microarray data

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Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships

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Use of normalization methods for analysis of microarrays containing a high degree of gene effects

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Normalization of oligonucleotide arrays based on the least-variant set of genes

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Global rank-invariant set normalization (GRSN) to reduce systematic distortions in microarray data

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NCBI GEO: mining tens of millions of expression profiles--database and tools update

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Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer

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Summaries of Affymetrix GeneChip probe level data

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Hallmarks of Cancer: The Next Generation

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The Hallmarks of Cancer

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Acinar cell apoptosis in Serpini2-deficient mice models pancreatic insufficiency

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Isolation and characterization of a novel human pancreas-specific gene, pancpin, that is down-regulated in pancreatic cancer cells

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Subset quantile normalization using negative control features

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How high is the level of technical noise in microarray data?

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Genome-wide co-expression based prediction of differential expressions

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Gene expression profiling in cervical cancer: identification of novel markers for disease diagnosis and therapy.

21 January 2018

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Gaining confidence in biological interpretation of the microarray data: the functional consistence of the significant GO categories

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Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis

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Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network

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Validation of alternative methods of data normalization in gene co-expression studies

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Computational discovery of gene modules and regulatory networks

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Integrative analysis of gene expression and copy number alterations using canonical correlation analysis

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Differential DNA methylation correlates with differential expression of angiogenic factors in human heart failure

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Principles and challenges of genomewide DNA methylation analysis

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Preprocessing and downstream analysis of microarray DNA copy number profiles

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Normalization of array-CGH data: influence of copy number imbalances

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Impact of normalization on miRNA microarray expression profiling

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Quality assessment and data analysis for microRNA expression arrays

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Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context

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Array-based DNA methylation profiling in follicular lymphoma

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Human aging-associated DNA hypermethylation occurs preferentially at bivalent chromatin domains

21 January 2018

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Age-dependent DNA methylation of genes that are suppressed in stem cells is a hallmark of cancer.

21 January 2018

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KEGG: kyoto encyclopedia of genes and genomes

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Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions

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Comparing classical pathways and modern networks: towards the development of an edge ontology

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Human Protein Reference Database--2009 update

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SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data

21 January 2018

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Signal transduction pathway profiling of individual tumor samples

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Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays

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Significance analysis of microarrays applied to the ionizing radiation response

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Stratified false discovery control for large-scale hypothesis testing with application to genome-wide association studies

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Improving power in genome-wide association studies: weights tip the scale

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Identifiers

DOI

10.1039/C2MB05466C

1 reference

31 July 2017

1 reference