(Q34180532)

31 July 2017

title

DNA polymorphism: a comparison of force fields for nucleic acids (English)

1 reference

31 July 2017

3

Martin Karplus

1 reference

31 July 2017

Fabrice Leclerc

2

0 references

author name string

Swarnalatha Y Reddy

series ordinal

1

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 March 2003

1 reference

31 July 2017

1 reference

31 July 2017

volume

84

1 reference

31 July 2017

issue

3

1 reference

31 July 2017

page(s)

1421-1449

1 reference

Molecular dynamics simulation of nucleic acids: successes, limitations, and promise

31 July 2017

cites work

1 reference

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1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium

5 July 2018

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5 July 2018

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X-ray crystallographic analysis of the hydration of A- and B-form DNA at atomic resolution

5 July 2018

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Water and monovalent ions in the minor groove of B-DNA oligonucleotides as seen by NMR.

5 July 2018

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Conformational flexibility of B-DNA at 0.74 A resolution: d(CCAGTACTGG)(2)

5 July 2018

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Sequence-specific binding of counterions to B-DNA.

5 July 2018

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Sodium and chlorine ions as part of the DNA solvation shell

5 July 2018

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Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing

5 July 2018

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Protein-DNA interactions: A structural analysis

5 July 2018

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Ethanol-induced structural transitions of DNA on mica

5 July 2018

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Molecular dynamic simulations of environment and sequence dependent DNA conformations: the development of the BMS nucleic acid force field and comparison with experimental results

5 July 2018

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Hydration of the phosphate group in double-helical DNA

5 July 2018

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Structural equilibrium of DNA represented with different force fields

5 July 2018

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5 July 2018

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The B-DNA dodecamer at high resolution reveals a spine of water on sodium

5 July 2018

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DNA bending: the prevalence of kinkiness and the virtues of normality

5 July 2018

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A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation

5 July 2018

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Insight into the stabilization of A-DNA by specific ion association: spontaneous B-DNA to A-DNA transitions observed in molecular dynamics simulations of d[ACCCGCGGGT]2 in the presence of hexaamminecobalt(III).

5 July 2018

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Kinetics of DNA hydration

5 July 2018

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Sequence-specific local structural variations in solution structures of d(CGXX'CG)2 and d(CAXX'TG)2 self-complementary deoxyribonucleic acids

5 July 2018

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Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution

5 July 2018

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Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA.

5 July 2018

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5 July 2018

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The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps

5 July 2018

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Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition

5 July 2018

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Conformational flexibility of DNA: polymorphism and handedness

5 July 2018

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The interpretation of protein structures: Estimation of static accessibility

5 July 2018

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Refinement of the structure of B-DNA and implications for the analysis of X-ray diffraction data from fibers of biopolymers

5 July 2018

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5 July 2018

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Structure of a B-DNA decamer with a central T-A step: C-G-A-T-T-A-A-T-C-G

5 July 2018

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Studies on metal ions-DNA interactions: Specific behaviour of reiterative DNA sequences

5 July 2018

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5 July 2018

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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7 January 2021

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Die Berechnung optischer und elektrostatischer Gitterpotentiale

7 January 2021

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Modeling high-resolution hydration patterns in correlation with DNA sequence and conformation

7 January 2021

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B-DNA twisting correlates with base-pair morphology.

7 January 2021

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Sequence-dependent DNA structure. The role of base stacking interactions

7 January 2021

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Comparison of simple potential functions for simulating liquid water

7 January 2021

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Ordered water structure around a B-DNA dodecamer. A quantitative study

7 January 2021

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DNA polymorphism under the influence of low pH and low temperature

7 January 2021

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DNA multimode interaction with berenil and pentamidine; double helix stiffening, unbending and bending

7 January 2021

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7 January 2021

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7 January 2021

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Comparison of major groove hydration in isomorphous A-DNA octamers and dependence on base sequence and local helix geometry

7 January 2021

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7 January 2021

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7 January 2021

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inferred from DOI database lookup

7 January 2021

based on heuristic

High salt and solvent induced Z-conformation in native calf thymus DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12609851

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Toward the Accurate Modeling of DNA: The Importance of Long-Range Electrostatics

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/S0006-3495(03)74957-1

Identifiers

DOI

10.1016/S0006-3495(03)74957-1

1 reference

release_5dntkmngxzayhcs4ivtornd7me

31 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/5dntkmngxzayhcs4ivtornd7me

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

1302718

1 reference

31 July 2017

1 reference