(Q34256511)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

title

Why do protein folding rates correlate with metrics of native topology? (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Rui Travasso

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Andrea Parisi

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

Antonio Rey

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1

Patrícia F N Faísca

1 reference

31 July 2017

Rui D M Travasso

2

1 reference

22558173

31 July 2017

Andrea Parisi

3

1 reference

22558173

31 July 2017

language of work or name

English

0 references

publication date

27 April 2012

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

volume

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

page(s)

e35599

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

31 January 2020

copyright license

start time

27 April 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Cooperativity, local-nonlocal coupling, and nonnative interactions: principles of protein folding from coarse-grained models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Non‐native interactions play an effective role in protein folding dynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Coordinate-dependent diffusion in protein folding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

What have we learned from the studies of two-state folders, and what are the unanswered questions about two-state protein folding?

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Identifying critical residues in protein folding: Insights from phi-value and P(fold) analysis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Kinetic barriers and the role of topology in protein and RNA folding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Loop-closure principles in protein folding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

P versus Q: structural reaction coordinates capture protein folding on smooth landscapes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Nucleation and the transition state of the SH3 domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Protein folding and the organization of the protein topology universe.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Transition states for protein folding have native topologies despite high structural variability

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Contact order revisited: influence of protein size on the folding rate

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

The present view of the mechanism of protein folding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Self-consistent determination of the transition state for protein folding: application to a fibronectin type III domain

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

The topomer search model: A simple, quantitative theory of two-state protein folding kinetics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

How the folding rate constant of simple, single-domain proteins depends on the number of native contacts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Prediction of folding mechanism for circular-permuted proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Three key residues form a critical contact network in a protein folding transition state

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Kinetics, thermodynamics and evolution of non-native interactions in a protein folding nucleus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Transition-state structure as a unifying basis in protein-folding mechanisms: contact order, chain topology, stability, and the extended nucleus mechanism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

A simple model for calculating the kinetics of protein folding from three-dimensional structures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

The topomer-sampling model of protein folding

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Lattice models for proteins reveal multiple folding nuclei for nucleation-collapse mechanism

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Contact order, transition state placement and the refolding rates of single domain proteins.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Kinetics and thermodynamics of folding in model proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

Principles of protein folding--a perspective from simple exact models.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3338708

A critical assessment of the topomer search model of protein folding using a continuum explicit-chain model with extensive conformational sampling

6 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035599

Specific nucleus as the transition state for protein folding: evidence from the lattice model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035599

Contact order dependent protein folding rates: kinetic consequences of a cooperative interplay between favorable nonlocal interactions and local conformational preferences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035599

Use of the Weighted Histogram Analysis Method for the Analysis of Simulated and Parallel Tempering Simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035599

On the transition coordinate for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0035599

The protein folding transition state: Insights from kinetics and thermodynamics

21 January 2018

1 reference

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Rate determining factors in protein model structures

21 January 2018

1 reference

12 December 2020

Proteins with selected sequences fold into unique native conformation

1 reference

12 December 2020

Chain Length Scaling of Protein Folding Time

1 reference

12 December 2020

Do proteins with similar folds have similar transition state structures? A diffuse transition state of the 169 residue apoflavodoxin

1 reference

12 December 2020

Cooperativity in protein folding: from lattice models with sidechains to real proteins

1 reference

12 December 2020

Universality and diversity of the protein folding scenarios: a comprehensive analysis with the aid of a lattice model

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0035599

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json

31 January 2020

22558173

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22558173%20AND%20SRC:MED&resulttype=core&format=json