(Q34275201)

1 August 2017

title

Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts (English)

1 reference

1 August 2017

11

1 reference

Milana Frenkel-Morgenstern

1 August 2017

Milana Frenkel-Morgenstern

1

0 references

Rory Johnson

Rory Johnson

9

0 references

Iakes Ezkurdia

3

Iakes Ezkurdia

1 reference

1 August 2017

Roderic Guigó i Serra

10

Roderic Guigo

1 reference

1 August 2017

Vincent Lacroix

2

1 reference

1 August 2017

Yishai Levin

4

1 reference

1 August 2017

Alexandra Gabashvili

5

1 reference

1 August 2017

Jaime Prilusky

6

1 reference

1 August 2017

Angela Del Pozo

7

1 reference

1 August 2017

Michael Tress

8

1 reference

1 August 2017

publication date

15 May 2012

1 reference

1 August 2017

1 reference

1 August 2017

volume

22

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1 August 2017

issue

7

1 reference

1 August 2017

page(s)

1231-1242

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Evidence for transcript networks composed of chimeric RNAs in human cells

1 August 2017

cites work

1 reference

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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6 July 2018

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Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro

6 July 2018

1 reference

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The evolution of spliced leader trans-splicing in nematodes

6 July 2018

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6 July 2018

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Regulatory divergence in Drosophila revealed by mRNA-seq.

6 July 2018

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6 July 2018

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XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results

6 July 2018

1 reference

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6 July 2018

The PeptideAtlas Project

1 reference

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Detection of human interchromosomal trans-splicing in sequence databanks.

6 July 2018

1 reference

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ChimerDB 2.0--a knowledgebase for fusion genes updated

6 July 2018

1 reference

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6 July 2018

1 reference

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Implications of chimaeric non-co-linear transcripts

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Evaluation of folding co-operativity of a chimeric protein based on the molecular recognition between polyproline ligands and SH3 domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Chimeric transcript discovery by paired-end transcriptome sequencing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Protein structure prediction on the Web: a case study using the Phyre server

6 July 2018

1 reference

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Gene fusions and RNA trans-splicing in normal and neoplastic human cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Transcriptome sequencing to detect gene fusions in cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Dynamic proteomics of individual cancer cells in response to a drug.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

A neoplastic gene fusion mimics trans-splicing of RNAs in normal human cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Chromosomal translocations in cancer

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

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6 July 2018

1 reference

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Efficient targeted transcript discovery via array-based normalization of RACE libraries

6 July 2018

1 reference

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PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Use of synthetic signal sequences to explore the protein export machinery

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Locating proteins in the cell using TargetP, SignalP and related tools

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

The bursicon gene in mosquitoes: an unusual example of mRNA trans-splicing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

The implications of alternative splicing in the ENCODE protein complement

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

GENCODE: producing a reference annotation for ENCODE

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

EGASP: the human ENCODE Genome Annotation Assessment Project

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

MATN and LAPTM are parts of larger transcription units produced by intergenic splicing: intergenic splicing may be a common phenomenon

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

MLL chimeric protein activation renders cells vulnerable to chromosomal damage: an explanation for the very short latency of infant leukemia

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Alternative trans-splicing: a novel mode of pre-mRNA processing

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Tandem chimerism as a means to increase protein complexity in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Transcription-mediated gene fusion in the human genome

6 July 2018

1 reference

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Promoter features related to tissue specificity as measured by Shannon entropy

6 July 2018

1 reference

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6 July 2018

1 reference

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6 July 2018

1 reference

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6 July 2018

1 reference

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Expression of an E1A/E7 chimeric protein sensitizes tumor cells to killing by activated macrophages but not NK cells

6 July 2018

1 reference

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A statistical model for identifying proteins by tandem mass spectrometry

6 July 2018

1 reference

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WU-Blast2 server at the European Bioinformatics Institute

6 July 2018

1 reference

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An endogenous hybrid mRNA encodes TWE-PRIL, a functional cell surface TWEAK-APRIL fusion protein

6 July 2018

1 reference

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

6 July 2018

1 reference

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BLAT—The BLAST-Like Alignment Tool

6 July 2018

1 reference

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Fusion of the human gene for the polyubiquitination coeffector UEV1 with Kua, a newly identified gene

6 July 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 July 2018

1 reference

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Improved tools for biological sequence comparison

6 July 2018

1 reference

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Evidence for multiple independent origins of trans-splicing in Metazoa

6 July 2018

1 reference

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QVALITY: non-parametric estimation of q-values and posterior error probabilities

28 October 2018

1 reference

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Short homologous sequences are strongly associated with the generation of chimeric RNAs in eukaryotes.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Genomic characterization of MOZ/CBP and CBP/MOZ chimeras in acute myeloid leukemia suggests the involvement of a damage-repair mechanism in the origin of the t(8;16)(p11;p13).

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Trans-splicing in Drosophila.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Chromosomal translocations in human cancer.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3396365

Comparison of Current BLAST Software on Nucleotide Sequences

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22588898

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.130062.111

1 reference

1 August 2017

1 reference

1 August 2017

1 reference