(Q34305163)

English

Additive multiple k-mer transcriptome of the keelworm Pomatoceros lamarckii (Annelida; Serpulidae) reveals annelid trochophore transcription factor cassette

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scholarly article

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Europe PubMed Central

PubMed publication ID

1 August 2017

Additive multiple k-mer transcriptome of the keelworm Pomatoceros lamarckii (Annelida; Serpulidae) reveals annelid trochophore transcription factor cassette (English)

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

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1 reference

based on heuristic

inferred from title

Pomatoceros lamarckii

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1 reference

based on heuristic

inferred from title

object named as

Serpulidae

1 reference

based on heuristic

inferred from title

Nathan J. Kenny

object named as

Nathan J Kenny

1

0 references

Sebastian M Shimeld

object named as

Sebastian M Shimeld

2

0 references

publication date

9 October 2012

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

Development Genes and Evolution

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

222

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

325-339

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

The transcription factors HeBlimp and HeT-brain of an indirectly developing polychaete suggest ancestral endodermal, gastrulation, and sensory cell-type specification roles

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Evolution of the bilaterian larval foregut

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The evolution of nervous system centralization

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Phylogeny of the SOX family of developmental transcription factors based on sequence and structural indicators

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Forkhead transcription factors: key players in development and metabolism

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The Jalview Java alignment editor

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Molecular architecture of annelid nerve cord supports common origin of nervous system centralization in bilateria

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Gene discovery and annotation using LCM-454 transcriptome sequencing.

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The Pfam protein families database

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The normal development of Platynereis dumerilii (Nereididae, Annelida)

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The homeobox in perspective

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

High-throughput functional annotation and data mining with the Blast2GO suite

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

B2G-FAR, a species-centered GO annotation repository

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Biases in Illumina transcriptome sequencing caused by random hexamer priming

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

CAP3: A DNA sequence assembly program

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Extensive chordate and annelid macrosynteny reveals ancestral homeobox gene organization.

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Expansion of the SOX gene family predated the emergence of the Bilateria

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Orthologs of key vertebrate neural genes are expressed during neurogenesis in the annelid Platynereis dumerilii

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Origin and diversity of the SOX transcription factor gene family: genome-wide analysis in Fugu rubripes

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Comparing de novo assemblers for 454 transcriptome data

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The homeodomain protein hmbx-1 maintains asymmetric gene expression in adult C. elegans olfactory neurons

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Next-generation transcriptome assembly

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The development of the larval nervous system, musculature and ciliary bands of Pomatoceros lamarckii (Annelida): heterochrony in polychaetes

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Annelid Distal-less/Dlx duplications reveal varied post-duplication fates

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

KAAS: an automatic genome annotation and pathway reconstruction server

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The T-box gene family

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

A genome-wide view of transcription factor gene diversity in chordate evolution: less gene loss in amphioxus?

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The amphioxus genome and the evolution of the chordate karyotype

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Vertebrate-type intron-rich genes in the marine annelid Platynereis dumerilii

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

De novo assembly and analysis of RNA-seq data.

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Paxbeta: a novel family of lophotrochozoan Pax genes

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Next-generation sequencing transforms today's biology

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Clustered Fox genes in lophotrochozoans and the evolution of the bilaterian Fox gene cluster

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Evolutionary genomics of the Fox genes: origin of gene families and the ancestry of gene clusters.

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

The genome of the sea urchin Strongylocentrotus purpuratus

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Phylogenomic analyses unravel annelid evolution

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Optimization of de novo transcriptome assembly from next-generation sequencing data

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

T-Brain expression in the apical organ of hemichordate tornaria larvae suggests its evolutionary link to the vertebrate forebrain.

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Amphioxus and ascidian Dmbx homeobox genes give clues to the vertebrate origins of midbrain development

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

An EST screen from the annelid Pomatoceros lamarckii reveals patterns of gene loss and gain in animals

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Comprehensive survey and classification of homeobox genes in the genome of amphioxus, Branchiostoma floridae.

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Emerging systems: between vertebrates and arthropods, the Lophotrochozoa

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Conserved sensory-neurosecretory cell types in annelid and fish forebrain: insights into hypothalamus evolution

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

De novo characterization of a whitefly transcriptome and analysis of its gene expression during development.

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Expression of Distal-less, dachshund, and optomotor blind in Neanthes arenaceodentata (Annelida, Nereididae) does not support homology of appendage-forming mechanisms across the Bilateria

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

HomeoDB2: functional expansion of a comparative homeobox gene database for evolutionary developmental biology

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

HomeoDB: a database of homeobox gene diversity

1 reference

https://api.crossref.org/works/10.1007%2FS00427-012-0416-6

21 January 2018

Loss and gain of domains during evolution of cut superclass homeobox genes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/23053624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unified nomenclature for the winged helix/forkhead transcription factors

1 reference

https://pubmed.ncbi.nlm.nih.gov/23053624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression pattern of Brachyury in the mollusc Patella vulgata suggests a conserved role in the establishment of the AP axis in Bilateria

1 reference

https://pubmed.ncbi.nlm.nih.gov/23053624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Using the Velvet de novo assembler for short-read sequencing technologies

1 reference

https://pubmed.ncbi.nlm.nih.gov/23053624

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00427-012-0416-6

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

1 August 2017

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