(Q34361482)

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Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription

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scholarly article

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Europe PubMed Central

1 August 2017

Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription (English)

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Europe PubMed Central

1 August 2017

1 reference

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Kenneth W. Berendzen

object named as

Kenneth W Berendzen

1

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author name string

Christoph Weiste

2

1 reference

Europe PubMed Central

1 August 2017

Dierk Wanke

3

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Europe PubMed Central

1 August 2017

Joachim Kilian

4

1 reference

Europe PubMed Central

1 August 2017

Klaus Harter

5

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Europe PubMed Central

1 August 2017

Wolfgang Dröge-Laser

6

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Europe PubMed Central

1 August 2017

publication date

1 August 2012

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Europe PubMed Central

1 August 2017

BMC Plant Biology

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Europe PubMed Central

1 August 2017

12

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Europe PubMed Central

1 August 2017

125

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Europe PubMed Central

1 August 2017

describes a project that uses

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Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/3438128

based on heuristic

inferred from PubMed Central ID database lookup

https://scigraph.springernature.com/pub.10.1186/1471-2229-12-125

0 references

Root development-two meristems for the price of one?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Auxin signal transduction in Arabidopsis vein formation

1 reference

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6 July 2018

Auxin control of embryo patterning.

1 reference

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6 July 2018

ModuleMaster: a new tool to decipher transcriptional regulatory networks

1 reference

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6 July 2018

Mechanism of auxin-regulated gene expression in plants

1 reference

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6 July 2018

Computational methods for the detection of cis-regulatory modules

1 reference

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6 July 2018

Auxin: a trigger for change in plant development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

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1 reference

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1 reference

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1 reference

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6 July 2018

Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves

1 reference

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6 July 2018

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1 reference

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6 July 2018

Two-hybrid protein-protein interaction analysis in Arabidopsis protoplasts: establishment of a heterodimerization map of group C and group S bZIP transcription factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

1 reference

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6 July 2018

Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

The fall and rise of apical dominance

1 reference

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6 July 2018

The Arabidopsis F-box protein TIR1 is an auxin receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

The F-box protein TIR1 is an auxin receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Interdependency of brassinosteroid and auxin signaling in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

The auxin-induced transcriptome for etiolated Arabidopsis seedlings using a structure/function approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

A G-Box-Binding Protein from Soybean Binds to the E1 Auxin-Response Element in the Soybean GH3 Promoter and Contains a Proline-Rich Repression Domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Genetics of Aux/IAA and ARF action in plant growth and development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Auxin-responsive gene expression: genes, promoters and regulatory factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Auxins and tropisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

bZIP transcription factors in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

ABA and sugar interactions regulating development: cross-talk or voices in a crowd?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Auxin regulates SCF(TIR1)-dependent degradation of AUX/IAA proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Transactivation of the Brassica napus napin promoter by ABI3 requires interaction of the conserved B2 and B3 domains of ABI3 with different cis-elements: B2 mediates activation through an ABRE, whereas B3 interacts with an RY/G-box

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Activation and repression of transcription by auxin-response factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Role of arabidopsis MYC and MYB homologs in drought- and abscisic acid-regulated gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

ARF1, a transcription factor that binds to auxin response elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

A conserved domain of the viviparous-1 gene product enhances the DNA binding activity of the bZIP protein EmBP-1 and other transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

A flower-specific Myb protein activates transcription of phenylpropanoid biosynthetic genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Soybean GH3 promoter contains multiple auxin-inducible elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Isolation of two soybean G-box binding factors which interact with a G-box sequence of an auxin-responsive gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

RY repeats are conserved in the 5'-flanking regions of legume seed-protein genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Auxin-induced expression of the soybean GH3 promoter in transgenic tobacco plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3438128

6 July 2018

Dimerization and DNA binding of auxin response factors

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-125

21 January 2018

The tobacco bZIP transcription factor BZI-1 binds the GH3 promoter in vivo and modulates auxin-induced transcription

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-125

21 January 2018

A novel subgroup of bZIP proteins functions as transcriptional activators in hypoosmolarity-responsive expression of the ProDH gene in Arabidopsis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-125

21 January 2018

ABP1: an auxin receptor for fast responses at the plasma membrane

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-125

21 January 2018

An R2R3-type transcription factor gene AtMYB59 regulates root growth and cell cycle progression in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-125

21 January 2018

Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid

1 reference

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21 January 2018

Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice.

1 reference

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21 January 2018

Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-125

21 January 2018

A pivotal role of the basic leucine zipper transcription factor bZIP53 in the regulation of Arabidopsis seed maturation gene expression based on heterodimerization and protein complex formation.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2229-12-125

21 January 2018

A central integrator of transcription networks in plant stress and energy signalling.

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21 January 2018

Physical interactions between ABA response loci of Arabidopsis.

1 reference

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21 January 2018

Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19.

1 reference

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21 January 2018

NAN fusions: a synthetic sialidase reporter gene as a sensitive and versatile partner for GUS.

1 reference

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21 January 2018

Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling.

1 reference

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Using the Arabidopsis information resource (TAIR) to find information about Arabidopsis genes.

1 reference

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1 reference

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27 October 2018

Identification of the auxin-responsive element, AuxRE, in the primary indoleacetic acid-inducible gene, PS-IAA4/5, of pea (Pisum sativum)

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An auxin-inducible element in soybean SAUR promoters

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heterodimers of the Arabidopsis transcription factors bZIP1 and bZIP53 reprogram amino acid metabolism during low energy stress

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional architecture and evolution of transcriptional elements that drive gene coexpression

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How does auxin turn on genes?

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Composite structure of auxin response elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ARF family of transcription factors and their role in plant hormone-responsive transcription

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of protein-binding DNA sequences in an auxin-regulated gene of soybean

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Arabidopsis transcription factor MYB77 modulates auxin signal transduction

1 reference

https://pubmed.ncbi.nlm.nih.gov/22852874

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2229-12-125

1 reference

Europe PubMed Central

1 August 2017

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release_tysi2iqbi5amrnkk533gqjfnoi

1 reference

https://api.fatcat.wiki/v0/release/tysi2iqbi5amrnkk533gqjfnoi

24 November 2022

based on heuristic

mapped directly with Wikidata item

1 reference

Europe PubMed Central

1 August 2017

1 reference

Europe PubMed Central

1 August 2017

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