(Q34382684)

1 August 2017

title

Temperature adaptation at homologous sites in proteins from nine thermophile-mesophile species pairs (English)

1 reference

1 August 2017

John H McDonald

1

1 reference

1 August 2017

publication date

12 July 2010

1 reference

Genome Biology and Evolution

1 August 2017

published in

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1 August 2017

volume

2

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1 August 2017

page(s)

267-276

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Parallel adaptations to high temperatures in the Archaean eon.

1 August 2017

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6 July 2018

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The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis

6 July 2018

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6 July 2018

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A comparison of proteins from Pyrococcus furiosus and Pyrococcus abyssi: barophily in the physicochemical properties of amino acids and in the genetic code

6 July 2018

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Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus

6 July 2018

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Complete Genome Sequence of the Genetically Tractable Hydrogenotrophic Methanogen Methanococcus maripaludis

6 July 2018

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6 July 2018

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Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens

6 July 2018

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6 July 2018

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Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii

6 July 2018

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6 July 2018

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The genome sequence of Clostridium tetani, the causative agent of tetanus disease

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.

6 July 2018

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Elucidation of factors responsible for enhanced thermal stability of proteins: a structural genomics based study

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

A complete sequence of the T. tengcongensis genome

6 July 2018

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Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

6 July 2018

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The stability of thermophilic proteins: a study based on comprehensive genome comparison

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites

6 July 2018

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Identification of thermophilic species by the amino acid compositions deduced from their genomes

6 July 2018

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Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability

6 July 2018

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Patterns of temperature adaptation in proteins from Methanococcus and Bacillus

6 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1

6 July 2018

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Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

The complete genome sequence of the gram-positive bacterium Bacillus subtilis

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding Regions

6 July 2018

1 reference

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Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

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6 July 2018

1 reference

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Amino acid properties and side-chain orientation in proteins: A cross correlation approach

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Thermal stability and protein structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Effective factors in thermostability of thermophilic proteins

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Inferring parameters shaping amino acid usage in prokaryotic genomes via Bayesian MCMC methods

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Genomic correlates of hyperthermostability, an update.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis

27 October 2018

1 reference

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Base composition bias might result from competition for metabolic resources.

27 October 2018

1 reference

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27 October 2018

1 reference

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Protein surface amino acid compositions distinctively differ between thermophilic and mesophilic bacteria

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Patterns of temperature adaptation in proteins from the bacteria Deinococcus radiodurans and Thermus thermophilus

27 October 2018

1 reference

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Nucleotide bias causes a genomewide bias in the amino acid composition of proteins.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Structural differences between mesophilic, moderately thermophilic and extremely thermophilic protein subunits: results of a comprehensive survey

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Important amino acid properties for enhanced thermostability from mesophilic to thermophilic proteins

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Energetics of amino acid synthesis in hydrothermal ecosystems

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Relevance of sequence statistics for the properties of extremophilic proteins.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

The characterization of amino acid sequences in proteins by statistical methods

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Structural and Genomic Correlates of Hyperthermostability

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2997543

Selection on synthesis cost affects interprotein amino acid usage in all three domains of life

9 December 2018

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12 December 2020

Influence of genomic G+C content on average amino-acid composition of proteins from 59 bacterial species

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12 December 2020

Relationship between amino acid properties and protein stability: buried mutations

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12 December 2020

A new scale for side-chain contribution to protein stability based on the empirical stability analysis of mutant proteins

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12 December 2020

Identifiers

DOI

10.1093/GBE/EVQ017

1 reference

1 August 2017

1 reference

1 August 2017

1 reference