(Q34442088)

2 August 2017

title

Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA. (English)

1 reference

2 August 2017

Johannes M Keegstra

3

0 references

David Dulin

David Dulin

6

0 references

Jan Lipfert

Jan Lipfert

1

0 references

Nynke Dekker

Nynke H Dekker

12

0 references

Rhiju Das

Rhiju Das

11

0 references

Mariana Köber

7

Mariana Köber

1 reference

2 August 2017

4

Toivo Hensgens

1 reference

2 August 2017

Gary M Skinner

2

1 reference

2 August 2017

Tessa Jager

5

1 reference

2 August 2017

Zhongbo Yu

8

1 reference

2 August 2017

Serge P Donkers

9

1 reference

2 August 2017

Fang-Chieh Chou

10

1 reference

2 August 2017

language of work or name

English

0 references

publication date

13 October 2014

1 reference

2 August 2017

number of pages

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

2 August 2017

volume

111

1 reference

2 August 2017

issue

43

1 reference

2 August 2017

page(s)

15408-15413

1 reference

Blind predictions of DNA and RNA tweezers experiments with force and torque

2 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Gold rotor bead tracking for high-speed measurements of DNA twist, torque and extension

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Strong bending of the DNA double helix

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Extreme bendability of DNA less than 100 base pairs long revealed by single-molecule cyclization.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Probing the elasticity of DNA on short length scales by modeling supercoiling under tension

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Elastic coupling between RNA degradation and unwinding by an exoribonuclease

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Recent developments in single-molecule DNA mechanics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Organization of intracellular reactions with rationally designed RNA assemblies

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

The emerging field of RNA nanotechnology

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Energetics at the DNA supercoiling transition

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Origins of specificity in protein-DNA recognition.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Experimental and computational determination of tRNA dynamics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Twist-stretch coupling and phase transition during DNA supercoiling

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Magnetic tweezers measurement of single molecule torque.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Remeasuring the double helix

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Unwinding RNA's secrets: advances in the biology, physics, and modeling of complex RNAs

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

On structural transitions, thermodynamic equilibrium, and the phase diagram of DNA and RNA duplexes under torque and tension

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

DNA mechanics as a tool to probe helicase and translocase activity.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

DNA overwinds when stretched

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Structures of the bacterial ribosome at 3.5 A resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Single-molecule measurements of the persistence length of double-stranded RNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

High salt solution structure of a left-handed RNA double helix

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Ten years of tension: single-molecule DNA mechanics

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Analysis of RNA flexibility by scanning force spectroscopy

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Estimating the persistence length of a worm-like chain molecule from force-extension measurements

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Stretched and overwound DNA forms a Pauling-like structure with exposed bases

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Homologous pairing in stretched supercoiled DNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Torsional directed walks, entropic elasticity, and DNA twist stiffness

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

The elasticity of a single supercoiled DNA molecule

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Entropic elasticity of lambda-phage DNA

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Structure of a B-DNA dodecamer at 16 K

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Crystallographic structure of an RNA helix: [U(UA)6A]2

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Electrophoretic and hydrodynamic properties of duplex ribonucleic acid molecules transcribed in vitro: evidence that A-tracts do not generate curvature in RNA.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4217419

Torque and dynamics of linking number relaxation in stretched supercoiled DNA.

6 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

Mechanical identities of RNA and DNA double helices unveiled at the single-molecule level

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

Electromagnetic torque tweezers: a versatile approach for measurement of single-molecule twist and torque.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

Multiplectoneme phase of double-stranded DNA under torsion

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

Spontaneous sharp bending of double-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

High flexibility of DNA on short length scales probed by atomic force microscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

Stiff Chains and Filaments under Tension

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

Molecular Conformations and Structure Transitions of RNA Complementary Helices and their Possible Biological Significance

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1407197111

DNA stretching and compression: large-scale simulations of double helical structures

21 January 2018

1 reference

12 December 2020

Overstretching DNA at 65 pN does not require peeling from free ends or nicks

1 reference

12 December 2020

1 reference

12 December 2020

Measurement of the torque on a single stretched and twisted DNA using magnetic tweezers

1 reference

12 December 2020

Nucleation at the DNA supercoiling transition

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1407197111

1 reference

2 August 2017

0 references

1 reference

2 August 2017

1 reference