(Q34571460)

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A maximum entropy approach to the study of residue-specific backbone angle distributions in α-synuclein, an intrinsically disordered protein

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scholarly article

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Europe PubMed Central

PubMed publication ID

3 August 2017

A maximum entropy approach to the study of residue-specific backbone angle distributions in α-synuclein, an intrinsically disordered protein (English)

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Europe PubMed Central

PubMed publication ID

3 August 2017

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inferred from title

object named as

Gerhard Hummer

5

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6

object named as

Ad Bax

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

author name string

Alexey B Mantsyzov

1

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Alexander S Maltsev

2

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Jinfa Ying

3

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

Yang Shen

4

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

publication date

22 July 2014

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Europe PubMed Central

PubMed publication ID

3 August 2017

number of pages

16

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based on heuristic

inferred from page(s)

Protein Science

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Europe PubMed Central

PubMed publication ID

3 August 2017

23

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Europe PubMed Central

PubMed publication ID

3 August 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

1275-1290

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

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Improved Cross Validation of a Static Ubiquitin Structure Derived from High Precision Residual Dipolar Couplings Measured in a Drug-Based Liquid Crystalline Phase

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Homonuclear decoupling for enhancing resolution and sensitivity in NOE and RDC measurements of peptides and proteins

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7 July 2018

pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins

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7 July 2018

Identification of fibril-like tertiary contacts in soluble monomeric α-synuclein

1 reference

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7 July 2018

Conformational propensities of intrinsically disordered proteins from NMR chemical shifts

1 reference

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7 July 2018

Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks

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7 July 2018

Characterization of disordered proteins with ENSEMBLE.

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7 July 2018

Probing the diverse landscape of protein flexibility and binding

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7 July 2018

Using NMR chemical shifts to calculate the propensity for structural order and disorder in proteins.

1 reference

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7 July 2018

Impact of N-terminal acetylation of α-synuclein on its random coil and lipid binding properties

1 reference

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7 July 2018

Measurement of ¹⁵N relaxation rates in perdeuterated proteins by TROSY-based methods

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7 July 2018

Conformational properties of the unfolded state of Im7 in nondenaturing conditions

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7 July 2018

Ensemble modeling of protein disordered states: experimental restraint contributions and validation

1 reference

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7 July 2018

Homogeneous and heterogeneous tertiary structure ensembles of amyloid-β peptides.

1 reference

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7 July 2018

SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitions

1 reference

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7 July 2018

Backbone assignment and dynamics of human α-synuclein in viscous 2 M glucose solution

1 reference

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7 July 2018

SPARTA+: a modest improvement in empirical NMR chemical shift prediction by means of an artificial neural network

1 reference

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7 July 2018

Cooperative formation of native-like tertiary contacts in the ensemble of unfolded states of a four-helix protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Improved side-chain torsion potentials for the Amber ff99SB protein force field

1 reference

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7 July 2018

Correlation of (2)J couplings with protein secondary structure.

1 reference

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7 July 2018

Determination of the free energy landscape of alpha-synuclein using spin label nuclear magnetic resonance measurements

1 reference

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7 July 2018

Intrinsic propensities of amino acid residues in GxG peptides inferred from amide I' band profiles and NMR scalar coupling constants

1 reference

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7 July 2018

Structural reorganization of alpha-synuclein at low pH observed by NMR and REMD simulations.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Optimized molecular dynamics force fields applied to the helix-coil transition of polypeptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Multiple tight phospholipid-binding modes of alpha-synuclein revealed by solution NMR spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Distribution of conformations sampled by the central amino acid residue in tripeptides inferred from amide I band profiles and NMR scalar coupling constants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Structure and dynamics of the Abeta(21-30) peptide from the interplay of NMR experiments and molecular simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Simultaneous NMR study of protein structure and dynamics using conservative mutagenesis.

1 reference

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7 July 2018

Phosphorylation at Ser-129 but not the phosphomimics S129E/D inhibits the fibrillation of alpha-synuclein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Improved structural characterizations of the drkN SH3 domain unfolded state suggest a compact ensemble with native-like and non-native structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

DisProt: the Database of Disordered Proteins

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7 July 2018

Sensitivity of secondary structure propensities to sequence differences between alpha- and gamma-synuclein: implications for fibrillation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Comparison of multiple Amber force fields and development of improved protein backbone parameters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Protein misfolding, functional amyloid, and human disease

1 reference

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7 July 2018

Conformation of the backbone in unfolded proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Polyproline II conformation is one of many local conformational states and is not an overall conformation of unfolded peptides and proteins.

1 reference

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7 July 2018

Polyproline II propensities from GGXGG peptides reveal an anticorrelation with beta-sheet scales

1 reference

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7 July 2018

Unusual compactness of a polyproline type II structure

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7 July 2018

Intrinsically unstructured proteins and their functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Release of long-range tertiary interactions potentiates aggregation of natively unstructured alpha-synuclein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

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The Protein Coil Library: a structural database of nonhelix, nonstrand fragments derived from the PDB.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Unfolded proteins and protein folding studied by NMR.

1 reference

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7 July 2018

Preferred peptide backbone conformations in the unfolded state revealed by the structure analysis of alanine-based (AXA) tripeptides in aqueous solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243998

7 July 2018

Protein Backbone 1H(N)-13Calpha and 15N-13Calpha residual dipolar and J couplings: new constraints for NMR structure determination

1 reference

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7 July 2018

Intrinsic disorder and protein function

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7 July 2018

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The use of 1JC alpha H alpha coupling constants as a probe for protein backbone conformation.

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NMR characterization of long-range order in intrinsically disordered proteins.

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Quantitative description of backbone conformational sampling of unfolded proteins at amino acid resolution from NMR residual dipolar couplings.

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21 January 2018

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https://api.crossref.org/works/10.1002%2FPRO.2511

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Limits on variations in protein backbone dynamics from precise measurements of scalar couplings.

1 reference

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Theoretical framework for NMR residual dipolar couplings in unfolded proteins

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based on heuristic

inferred from PubMed ID database lookup

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https://pubmed.ncbi.nlm.nih.gov/24976112

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Identifiers

10.1002/PRO.2511

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 August 2017

ResearchGate publication ID

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