(Q34671996)

3 August 2017

title

Evolution after introduction of a novel metabolic pathway consistently leads to restoration of wild-type physiology (English)

1 reference

3 August 2017

0 references

Sean Michael Carroll

1

1 reference

3 August 2017

Christopher J Marx

series ordinal

2

1 reference

3 August 2017

publication date

4 April 2013

1 reference

3 August 2017

1 reference

3 August 2017

volume

9

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3 August 2017

issue

4

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3 August 2017

page(s)

e1003427

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Creative Commons Attribution 4.0 International

3 August 2017

copyright license

start time

4 April 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3616920

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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7 July 2018

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Recovering from a bad start: rapid adaptation and tradeoffs to growth below a threshold density

7 July 2018

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Repeated, selection-driven genome reduction of accessory genes in experimental populations

7 July 2018

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High expression hampers horizontal gene transfer

7 July 2018

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Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

7 July 2018

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Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism

7 July 2018

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Diminishing returns epistasis among beneficial mutations decelerates adaptation

7 July 2018

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Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape

7 July 2018

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Multi-omics approach to study the growth efficiency and amino acid metabolism in Lactococcus lactis at various specific growth rates

7 July 2018

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A systems biology approach uncovers cellular strategies used by Methylobacterium extorquens AM1 during the switch from multi- to single-carbon growth

7 July 2018

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Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation

7 July 2018

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Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiation

7 July 2018

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7 July 2018

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The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast

7 July 2018

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Development of a broad-host-range sacB-based vector for unmarked allelic exchange

7 July 2018

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Formate as the main branch point for methylotrophic metabolism in Methylobacterium extorquens AM1

7 July 2018

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Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli

7 July 2018

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A comparison of background correction methods for two-colour microarrays

7 July 2018

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A role for genetic accommodation in evolution?

7 July 2018

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Clonal adaptive radiation in a constant environment

7 July 2018

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The many faces of glutathione in bacteria

7 July 2018

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Tests of parallel molecular evolution in a long-term experiment with Escherichia coli

7 July 2018

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

7 July 2018

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Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

7 July 2018

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Optimality and evolutionary tuning of the expression level of a protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Parallel genotypic adaptation: when evolution repeats itself

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. I. Growth-rate-dependent metabolic efficiency at steady state

7 July 2018

1 reference

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Flux analysis uncovers key role of functional redundancy in formaldehyde metabolism

7 July 2018

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Bioconductor: open software development for computational biology and bioinformatics

7 July 2018

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Uncovering cryptic genetic variation.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Formaldehyde-detoxifying role of the tetrahydromethanopterin-linked pathway in Methylobacterium extorquens AM1.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Microbial growth on C1 compounds. 1. Isolation and characterization of Pseudomonas AM 1

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Methylotrophy in Methylobacterium extorquens AM1 from a genomic point of view

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Purification, overproduction, and partial characterization of beta-RFAP synthase, a key enzyme in the methanopterin biosynthesis pathway

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

The population genetics of ecological specialization in evolving Escherichia coli populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Distribution of tetrahydromethanopterin-dependent enzymes in methylotrophic bacteria and phylogeny of methenyl tetrahydromethanopterin cyclohydrolases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

C1 transfer enzymes and coenzymes linking methylotrophic bacteria and methanogenic Archaea

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Purification and properties of an amine dehydrogenase from Pseudomonas AM1 and its role in growth on methylamine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3616920

Optimization of gene expression through divergent mutational paths.

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003427

Asymmetric, bimodal trade-offs during adaptation of Methylobacterium to distinct growth substrates.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003427

Implementation of microarrays for Methylobacterium extorquens AM1.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1003427

10.1371/JOURNAL.PGEN.1003427

21 January 2018

Identifiers

DOI

1 reference

3 August 2017

1 reference

3 August 2017

1 reference