(Q34701758)

4 August 2017

title

Complete plastid genome sequence of the basal asterid Ardisia polysticta Miq. and comparative analyses of asterid plastid genomes (English)

1 reference

4 August 2017

Ardisia polysticta

1 reference

Chuan Ku

1

0 references

Jer Ming Hu

object named as

Jer-Ming Hu

series ordinal

2

0 references

Chih-Horng Kuo

object named as

Chih-Horng Kuo

series ordinal

3

0 references

language of work or name

English

0 references

publication date

30 April 2013

1 reference

full work available at URL

4 August 2017

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3640096

1 reference

21 March 2022

1 reference

4 August 2017

volume

8

1 reference

4 August 2017

issue

4

1 reference

4 August 2017

page(s)

e62548

1 reference

Creative Commons Attribution 4.0 International

4 August 2017

copyright license

1 reference

3 April 2022

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0062548/transform/application/vnd.crossref.unixsd+xml

maintained by WikiProject

WikiProject Invasion Biology

0 references

cites work

Complete chloroplast genome sequence of Elodea canadensis and comparative analyses with other monocot plastid genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Complete chloroplast genome sequence of a major invasive species, crofton weed (Ageratina adenophora)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Complete chloroplast genome sequences of important oilseed crop Sesamum indicum L

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

The complete chloroplast DNA sequence of Eleutherococcus senticosus (Araliaceae); comparative evolutionary analyses with other three asterids

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Direct comparisons of Illumina vs. Roche 454 sequencing technologies on the same microbial community DNA sample

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III

7 July 2018

1 reference

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Angiosperm phylogeny: 17 genes, 640 taxa

7 July 2018

1 reference

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7 July 2018

1 reference

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Integrative genomics viewer

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Identification of new polymorphic regions and differentiation of cultivated olives (Olea europaea L.) through plastome sequence comparison

7 July 2018

1 reference

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Saponins as cytotoxic agents: a review.

7 July 2018

1 reference

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Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

7 July 2018

1 reference

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BLAST+: architecture and applications

7 July 2018

1 reference

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Comparative analysis of the complete sequence of the plastid genome of Parthenium argentatum and identification of DNA barcodes to differentiate Parthenium species and lines

7 July 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

7 July 2018

1 reference

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Recovering evolutionary trees under a more realistic model of sequence evolution

7 July 2018

1 reference

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Whole-genome mutational biases in bacteria

7 July 2018

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns

7 July 2018

1 reference

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OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta

7 July 2018

1 reference

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Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

7 July 2018

1 reference

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Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant Seed Plants

7 July 2018

1 reference

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Gene Relocations within Chloroplast Genomes of Jasminum and Menodora (Oleaceae) Are Due to Multiple, Overlapping Inversions

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1 reference

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The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications

7 July 2018

1 reference

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The genus Ardisia: a novel source of health-promoting compounds and phytopharmaceuticals

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants

7 July 2018

1 reference

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7 July 2018

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 July 2018

1 reference

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1 reference

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OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Analysis of the Amborella trichopoda chloroplast genome sequence suggests that amborella is not a basal angiosperm.

7 July 2018

1 reference

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Ardisiphenols and other antioxidant principles from the fruits of Ardisia colorata

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3640096

Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels

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1 reference

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1 reference

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REPuter: fast computation of maximal repeats in complete genomes.

7 July 2018

1 reference

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1 reference

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7 July 2018

2 references

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1 reference

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1 reference

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Rates and patterns of chloroplast DNA evolution

7 July 2018

1 reference

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Protein substitution in chloroplast ribosome evolution. A eukaryotic cytosolic protein has replaced its organelle homologue (L23) in spinach

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1 reference

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1 reference

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1 reference

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Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes

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Triterpenoid saponins from Ardisia crenata

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Identifiers

DOI

1 reference

release_q266it7glfdovpbs4tz6sl7hze

4 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/q266it7glfdovpbs4tz6sl7hze

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3640096

1 reference

4 August 2017

1 reference