(Q34708295)

4 August 2017

title

Genotype to phenotype mapping and the fitness landscape of the E. coli lac promoter (English)

1 reference

4 August 2017

0 references

Jakub Otwinowski

1

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Ilya Nemenman

object named as

Ilya Nemenman

series ordinal

2

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language of work or name

English

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publication date

1 May 2013

1 reference

4 August 2017

1 reference

4 August 2017

volume

8

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4 August 2017

issue

5

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4 August 2017

page(s)

e61570

1 reference

Creative Commons Attribution 4.0 International

4 August 2017

copyright license

start time

1 May 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Exploring the complexity of the HIV-1 fitness landscape

7 July 2018

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Evolutionary accessibility of mutational pathways

7 July 2018

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Nonlinear fitness landscape of a molecular pathway

7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Diminishing returns epistasis among beneficial mutations decelerates adaptation

7 July 2018

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Reciprocal sign epistasis is a necessary condition for multi-peaked fitness landscapes.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites

7 July 2018

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Quantitative analysis of fitness and genetic interactions in yeast on a genome scale

7 July 2018

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7 July 2018

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Rapid construction of empirical RNA fitness landscapes

7 July 2018

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Regularization Paths for Generalized Linear Models via Coordinate Descent

7 July 2018

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Sparse coding and high-order correlations in fine-scale cortical networks

7 July 2018

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Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence

7 July 2018

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Maximum entropy models for antibody diversity

7 July 2018

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Fitness epistasis and constraints on adaptation in a human immunodeficiency virus type 1 protein region

7 July 2018

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The genetic landscape of a cell

7 July 2018

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Model of transcriptional activation by MarA in Escherichia coli

7 July 2018

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Genome-wide identification of post-translational modulators of transcription factor activity in human B cells.

7 July 2018

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Neuronal couplings between retinal ganglion cells inferred by efficient inverse statistical physics methods

7 July 2018

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Epistasis--the essential role of gene interactions in the structure and evolution of genetic systems

7 July 2018

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Next-generation DNA sequencing

7 July 2018

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Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites

7 July 2018

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A maximum entropy model applied to spatial and temporal correlations from cortical networks in vitro.

7 July 2018

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Combinatorial transcriptional control of the lactose operon of Escherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Empirical fitness landscapes reveal accessible evolutionary paths

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

7 July 2018

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Weak pairwise correlations imply strongly correlated network states in a neural population

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Darwinian evolution can follow only very few mutational paths to fitter proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Adaptive filtering enhances information transmission in visual cortex

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

The biochemical architecture of an ancient adaptive landscape

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Evolutionary population genetics of promoters: predicting binding sites and functional phylogenies.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Optimality and evolutionary tuning of the expression level of a protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

The landscape of genetic complexity across 5,700 gene expression traits in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Adaptive evolution of transcription factor binding sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

A biophysical approach to transcription factor binding site discovery

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Analysis of E. coli promoter sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

Negative epistasis between beneficial mutations in an evolving bacterial population

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061570

Inferring fitness landscapes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061570

A global view of epistasis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061570

A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061570

On the selection and evolution of regulatory DNA motifs

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061570

Simple lessons from complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061570

Multivariate dependence and genetic networks inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061570

Modular epistasis in yeast metabolism.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641078

The Strength of Phenotypic Selection in Natural Populations

26 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0061570

Fitness epistasis among 6 biosynthetic loci in the budding yeast Saccharomyces cerevisiae

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23650500

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0061570

1 reference

4 August 2017

0 references

1 reference

1 reference

4 August 2017

1 reference