(Q34760462)

4 August 2017

title

Alternative computational protocols for supercharging protein surfaces for reversible unfolding and retention of stability (English)

1 reference

4 August 2017

main subject

computational biology

1 reference

Jeffrey J Gray

6

0 references

Brian Kuhlman

9

object named as

Brian Kuhlman

1 reference

4 August 2017

7

George Georgiou

1 reference

4 August 2017

8

Andrew D Ellington

1 reference

4 August 2017

5

Sergey Lyskov

1 reference

4 August 2017

Bryan S Der

1

1 reference

4 August 2017

Christien Kluwe

2

1 reference

4 August 2017

Aleksandr E Miklos

3

1 reference

4 August 2017

Ron Jacak

4

1 reference

4 August 2017

language of work or name

English

0 references

publication date

31 May 2013

1 reference

4 August 2017

1 reference

4 August 2017

volume

8

1 reference

4 August 2017

issue

5

1 reference

4 August 2017

page(s)

e64363

1 reference

Creative Commons Attribution 4.0 International

4 August 2017

copyright license

start time

31 May 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Probing the role of interfacial waters in protein-DNA recognition using a hybrid implicit/explicit solvation model

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Scientific benchmarks for guiding macromolecular energy function improvement

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Cellular uptake mechanisms and endosomal trafficking of supercharged proteins.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

A study on the effect of surface lysine to arginine mutagenesis on protein stability and structure using green fluorescent protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Structure-based design of supercharged, highly thermoresistant antibodies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Crystal structure of a supercharged variant of the human enteropeptidase light chain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Engineering and identifying supercharged proteins for macromolecule delivery into mammalian cells

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Computational protein design with explicit consideration of surface hydrophobic patches

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Protein-excipient interactions: mechanisms and biophysical characterization applied to protein formulation development

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

A class of human proteins that deliver functional proteins into mammalian cells in vitro and in vivo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Mechanisms of cellular uptake of cell-penetrating peptides

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

RosettaEPR: an integrated tool for protein structure determination from sparse EPR data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

RosettaAntibody: antibody variable region homology modeling server

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Twenty years of cell-penetrating peptides: from molecular mechanisms to therapeutics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

The RosettaDock server for local protein-protein docking

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Macromolecular modeling with rosetta

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Membrane interactions of designed cationic antimicrobial peptides: the two thresholds

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Supercharging proteins can impart unusual resilience

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

The stability effects of protein mutations appear to be universally distributed

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Arginine grafting to endow cell permeability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

RosettaDesign server for protein design

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Engineering and characterization of a superfolder green fluorescent protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Rational design of aggregation-resistant bioactive peptides: reengineering human calcitonin

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Protein drug stability: a formulation challenge

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Protein aggregation and its inhibition in biopharmaceutics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Protein structure prediction using Rosetta

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Protein aggregation in disease: a role for folding intermediates forming specific multimeric interactions

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Studies of the aggregation of mutant proteins in vitro provide insights into the genetics of amyloid diseases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Removal of surface charge-charge interactions from ubiquitin leaves the protein folded and very stable

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Contribution of salt bridges near the surface of a protein to the conformational stability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Cation-pi interactions in structural biology

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Intrinsic beta-sheet propensities result from van der Waals interactions between side chains and the local backbone

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

The green fluorescent protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Protein aggregation: folding aggregates, inclusion bodies and amyloid

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Chromophore formation in green fluorescent protein

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

A structural role for arginine in proteins: multiple hydrogen bonds to backbone carbonyl oxygens

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Multimeric intermediates in the pathway to the aggregated inclusion body state for P22 tailspike polypeptide chains

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Infrared Spectroscopic Studies of Lyophilization‐ and Temperature‐Induced Protein Aggregation

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Cellular uptake of the tat protein from human immunodeficiency virus

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Strength and co-operativity of contributions of surface salt bridges to protein stability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

A kinetic study of the competition between renaturation and aggregation during the refolding of denatured-reduced egg white lysozyme.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Arginine residues as stabilizing elements in proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669367

Specific aggregation of partially folded polypeptide chains: the molecular basis of inclusion body composition

7 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064363

High-throughput screening of excipients intended to prevent antigen aggregation at air-liquid interface.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064363

Surface supercharged human enteropeptidase light chain shows improved solubility and refolding yield.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064363

Protein folding and disease: a view from the first Horizon Symposium.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064363

Contribution of surface salt bridges to protein stability: guidelines for protein engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064363

Characterization of the pressure-induced intermediate and unfolded state of red-shifted green fluorescent protein--a static and kinetic FTIR, UV/VIS and fluorescence spectroscopy study

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064363

Protein stability and surface electrostatics: a charged relationship.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064363

Gain of function of mutant p53 by coaggregation with multiple tumor suppressors

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064363

Removal of the conserved disulfide bridges from the scfv fragment of an antibody: effects on folding kinetics and aggregation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0064363

Evidence for a self-associating equilibrium intermediate during folding of human growth hormone

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23741319

12 December 2020

inferred from PubMed ID database lookup

Temperature-pressure stability of green fluorescent protein: a Fourier transform infrared spectroscopy study

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23741319

12 December 2020

inferred from PubMed ID database lookup

Renaturation of Escherichia coli tryptophanase after exposure to 8 M urea. Evidence for the existence of nucleation centers

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23741319

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0064363

1 reference

release_b52ov7rklbcdtiy2zlhi3y6qlu

4 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/b52ov7rklbcdtiy2zlhi3y6qlu

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3669367

1 reference

4 August 2017

1 reference