(Q34785666)

4 August 2017

title

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes (English)

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4 August 2017

Brassica oleracea

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15

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45

Jacqueline Batley

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Meixia Zhao

Meixia Zhao

7

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France Denoeud

France Denoeud

79

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Hui Guo

Hui Guo

31

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Kun Lu

Kun Lu

13

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Graham J. King

Graham J King

25

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Jun Wang

Jun Wang

84

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David Edwards

David Edwards

5

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Joseph Christopher Pires

26

J Chris Pires

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48

Pradeep Ruperao

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6

Isobel A P Parkin

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77

Jonghoon Lee

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16

Tae-Jin Yang

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47

Beom-Seok Park

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1

Shengyi Liu

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85

Boulos Chalhoub

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38

Harry Belcram

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64

Huizhe Jin

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34

Jiumeng Min

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10

Shunmou Huang

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Xinfa Wang

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69

Yongming Zhou

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70

Zhongsong Liu

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86

Andrew H Paterson

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Yumei Liu

2

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Xinhua Yang

3

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Chaobo Tong

4

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Jianxin Ma

8

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Jingyin Yu

9

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Xiyin Wang

11

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Junyi Wang

12

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Zhiyuan Fang

14

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Qiong Hu

17

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Zhen Yue

19

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Haojie Li

20

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Linfeng Yang

21

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Jian Wu

22

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Qing Zhou

23

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Wanxin Wang

24

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Changxin Lu

27

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Zhangyan Wu

28

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Perumal Sampath

29

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Zhuo Wang

30

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Shengkai Pan

32

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Limei Yang

33

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Dong Zhang

35

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Dianchuan Jin

36

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Wanshun Li

37

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Jinxing Tu

39

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Mei Guan

40

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Cunkou Qi

41

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Dezhi Du

42

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Jiana Li

43

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Liangcai Jiang

44

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Andrew G Sharpe

46

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Feng Cheng

49

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Nomar Espinosa Waminal

50

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4 August 2017

Yin Huang

51

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4 August 2017

Caihua Dong

52

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4 August 2017

Li Wang

53

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4 August 2017

Jingping Li

54

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4 August 2017

Zhiyong Hu

55

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4 August 2017

Mu Zhuang

56

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4 August 2017

Yi Huang

57

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Junyan Huang

58

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Jiaqin Shi

59

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4 August 2017

Desheng Mei

60

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4 August 2017

Jing Liu

61

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4 August 2017

Tae-Ho Lee

62

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4 August 2017

Jinpeng Wang

63

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4 August 2017

Zaiyun Li

65

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4 August 2017

Xun Li

66

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4 August 2017

Jiefu Zhang

67

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4 August 2017

Lu Xiao

68

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Xuequn Liu

71

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Rui Qin

72

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4 August 2017

Xu Tang

73

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4 August 2017

Wenbin Liu

74

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Yupeng Wang

75

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4 August 2017

Yangyong Zhang

76

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Hyun Hee Kim

78

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4 August 2017

Xun Xu

80

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4 August 2017

Xinming Liang

81

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4 August 2017

Wei Hua

82

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4 August 2017

Xiaowu Wang

83

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4 August 2017

language of work or name

English

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publication date

23 May 2014

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4 August 2017

published in

Nature Communications

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4 August 2017

volume

5

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4 August 2017

page(s)

3930

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Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported

4 August 2017

copyright license

start time

23 May 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication

8 July 2018

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Structure-based discovery and description of plant and animal Helitrons

8 July 2018

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Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence

8 July 2018

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Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition

8 July 2018

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3,3'-diindolylmethane induction of p75NTR-dependent cell death via the p38 mitogen-activated protein kinase pathway in prostate cancer cells

8 July 2018

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Estimating maximum likelihood phylogenies with PhyML.

8 July 2018

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Infernal 1.0: inference of RNA alignments

8 July 2018

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Evolutionary genetics of genome merger and doubling in plants

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279128

Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes

8 July 2018

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Testing the ratio of two poisson rates

8 July 2018

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A unified classification system for eukaryotic transposable elements

8 July 2018

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Clustal W and Clustal X version 2.0

8 July 2018

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Ancestral chromosomal blocks are triplicated in Brassiceae species with varying chromosome number and genome size

8 July 2018

1 reference

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

8 July 2018

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Cruciferous vegetables and human cancer risk: epidemiologic evidence and mechanistic basis

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Accumulation and bioavailability of dietary carotenoids in vegetable crops

8 July 2018

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Positive selection driving diversification in plant secondary metabolism

8 July 2018

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Biology and biochemistry of glucosinolates

8 July 2018

1 reference

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Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279128

Chromosome triplication found across the tribe Brassiceae.

8 July 2018

1 reference

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AUGUSTUS: a web server for gene finding in eukaryotes

8 July 2018

1 reference

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8 July 2018

GeneWise and Genomewise

1 reference

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Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279128

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279128

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279128

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279128

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279128

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

8 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279128

8 July 2018

https://api.crossref.org/works/10.1038%2FNCOMMS4930

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4279128

Brassicaceae: Species checklist and database on CD-Rom

8 July 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

Different gene families in Arabidopsis thaliana transposed in different epochs and at different frequencies throughout the rosids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

Seventy million years of concerted evolution of a homoeologous chromosome pair, in parallel, in major Poaceae lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

MAM3 catalyzes the formation of all aliphatic glucosinolate chain lengths in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

Glucosinolate biosynthetic genes in Brassica rapa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

PASA--a program for automated protein NMR backbone signal assignment by pattern-filtering approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

LTR_STRUC: a novel search and identification program for LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCOMMS4930

Preferential retention of circadian clock genes during diploidization following whole genome triplication in Brassica rapa

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24852848

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS4930

1 reference

Dimensions Publication ID

4 August 2017

0 references

0 references

1 reference

4 August 2017

1 reference